View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_18 (Length: 442)
Name: NF0218_low_18
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 37202154 - 37202518
Alignment:
| Q |
28 |
caaattcaatgcgtaatttttcaagtgctgcatgagttaggaaacagtgacttcaaatcaaaatagttacaatgcattaagtgagtcctaaaaccactac |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37202154 |
caaattcaatgcgtaatttttcaagtgctgcatgagttaggaaacagtgacttcaaatcaaaatagttacaatgcattaagcgagtcctaaaaccactac |
37202253 |
T |
|
| Q |
128 |
catgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37202254 |
catgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttggcatacccaactg |
37202353 |
T |
|
| Q |
228 |
ttatagatatcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaacatttcggacactttttt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202354 |
ttatagatatcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaacatttcggacactttttt |
37202453 |
T |
|
| Q |
328 |
cttttgtgcttcacatttttctaatgcattctcagactcttcaatgagcttcctattactctctg |
392 |
Q |
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| T |
37202454 |
cttttgtgcttcacatttttccaatgcattctcagactcttcaatgagcttcctattactctctg |
37202518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 37183215 - 37183356
Alignment:
| Q |
160 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagatatcgcggtagactcatccttcgct |
259 |
Q |
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| T |
37183215 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
37183314 |
T |
|
| Q |
260 |
ctagccaatctctctttgcaagcagtttcttcagcacatatt |
301 |
Q |
| |
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| |||||||||| |||||||||||| |||| | |||||||| |
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| T |
37183315 |
atggccaatctctgtttgcaagcagtctctttatcacatatt |
37183356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 37194347 - 37194488
Alignment:
| Q |
160 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagatatcgcggtagactcatccttcgct |
259 |
Q |
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||||| ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| | || |||||| ||||||||| |
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| T |
37194347 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
37194446 |
T |
|
| Q |
260 |
ctagccaatctctctttgcaagcagtttcttcagcacatatt |
301 |
Q |
| |
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| |||||||||| |||||||||||| |||| | |||||||| |
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| T |
37194447 |
atggccaatctctgtttgcaagcagtctctttatcacatatt |
37194488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 309
Target Start/End: Original strand, 37180125 - 37180298
Alignment:
| Q |
136 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagat |
235 |
Q |
| |
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||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||||||||| | ||||||||| | ||||| ||||||| |||| |
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| T |
37180125 |
aaacaggaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcagaaagcgactgactttagatgtgcaataccgaactgtttgagat |
37180224 |
T |
|
| Q |
236 |
atcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaa |
309 |
Q |
| |
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|| | ||||||||||| ||| ||| | |||||| |||||||||||||| |||| | |||||||| ||||||| |
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| T |
37180225 |
attgaggtagactcattctttgctgcggtcaatctttctttgcaagcagtctctttaacacatatttcttccaa |
37180298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 37172833 - 37172935
Alignment:
| Q |
28 |
caaattcaatgcgtaatttttcaagtgctgcatgagttaggaaac-agtgacttcaaatcaaaatagt--tacaatgcattaagtgagtcctaaaaccac |
124 |
Q |
| |
|
||||||||||| || ||| | ||||| ||||||||||| |||||| |||| ||| ||||||||||||| || ||| ||||||| | |||||||||||| |
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| T |
37172833 |
caaattcaatgtgtcattgtgcaagtcctgcatgagttgggaaacaagtgtcttaaaatcaaaatagtcataaaat-cattaagcaaatcctaaaaccac |
37172931 |
T |
|
| Q |
125 |
tacc |
128 |
Q |
| |
|
|||| |
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|
| T |
37172932 |
tacc |
37172935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 309
Target Start/End: Complemental strand, 5365769 - 5365596
Alignment:
| Q |
136 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagat |
235 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||| ||||| | |||||||| | ||||| ||||| |||| |
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|
| T |
5365769 |
aaacaggaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcaaaaagcgtctggctttagatgtgtaataccggtctgtttgagat |
5365670 |
T |
|
| Q |
236 |
atcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaa |
309 |
Q |
| |
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|||| |||||| |||| ||| ||| || |||||| |||||||||||||| |||| | |||||||| ||||||| |
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|
| T |
5365669 |
atcgaggtagattcattctttgctgcagtcaatctttctttgcaagcagtctctttaacacatatttcttccaa |
5365596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 5365955 - 5366039
Alignment:
| Q |
113 |
tcctaaaaccactaccatgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagc |
197 |
Q |
| |
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||||||||| || |||||||| |||||| || |||||| |||| | |||||| |||||||| | |||||||| ||||||||||| |
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| T |
5365955 |
tcctaaaacaaccaccatgaataaaacagaaatatgaaactgcaacactaaattaaaccatccatcactgagcgtttcagaaagc |
5366039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 20450565 - 20450626
Alignment:
| Q |
136 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagc |
197 |
Q |
| |
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||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||||||||| |
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|
| T |
20450565 |
aaacaagaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcagaaagc |
20450626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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