View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_2 (Length: 707)
Name: NF0218_low_2
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 191 - 702
Target Start/End: Complemental strand, 41531737 - 41531228
Alignment:
| Q |
191 |
gagacaacactaaagcttaatactctctatatatatttgacgactctactttatgcgataaggttaagttgttgtggttagtatatagcatatattaaaa |
290 |
Q |
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| T |
41531737 |
gagacaacactaaagcttaatactctctatatatatttgacgactctactttatgctataaggttaagttgttgtggttagtatatagcatatattaaaa |
41531638 |
T |
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| Q |
291 |
agttaaaagaaagacttgtactccatataactatgattaatggaaccaaacggctatgatcaataaaatgatgtggtggtcatccacattgttatcttac |
390 |
Q |
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| T |
41531637 |
agttaaaagaaagacttgtactccatataactatga---atggaaccaaacggctatgatcaataaaatgatgtggtggtcatccacattgttatcttac |
41531541 |
T |
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| Q |
391 |
atattgcggtggccattgtaacactaaaacgtaaactacttttagcgacaattattaatctttaatggacatataagcgatcgttaaaatgttcaaaatt |
490 |
Q |
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| T |
41531540 |
atattgcggtggccattgtaacactaaaacgtaaactacttttagcgataattattaatctttaatggacatataagtgatcgttaaaatgttcaaaatt |
41531441 |
T |
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| Q |
491 |
cagcgacaaatacaatggtcaccagcaacaagtaagatgtc-aatgtgaacgagagtgagaggaaaaacactaaagatattagttatagacgatttaaga |
589 |
Q |
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| T |
41531440 |
tagcgacaaatacaatggtcaccaacaacatgtaagatgtcaaatgtgaacgagagtgagaggaaaaacactaaagatattagttatagacaatttatga |
41531341 |
T |
|
| Q |
590 |
ttttggtgtgtgtgtgatgaataaaatgttttgctttcaatttatagatagaagattccaatggtaacacaatagtaggcatgaggattgggtagtttct |
689 |
Q |
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| T |
41531340 |
tttcggtgtttatgtgatgaataaaatgttttgctttcaatttatagatagaagattccaatggtaacacaatagtgggcatgaggatgaggtagtttct |
41531241 |
T |
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| Q |
690 |
acacacgcttttc |
702 |
Q |
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| T |
41531240 |
acacacgtttttc |
41531228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 545
Target Start/End: Complemental strand, 41232283 - 41232213
Alignment:
| Q |
475 |
taaaatgttcaaaattcagcgacaaatacaatggtcaccagcaacaagtaagatgtcaatgtgaacgagag |
545 |
Q |
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||||||||||||||| ||| |||||||||||||| ||||||||||| | | |||||||||||| ||||||| |
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| T |
41232283 |
taaaatgttcaaaatccagagacaaatacaatggccaccagcaacatgcaggatgtcaatgtgtacgagag |
41232213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 41531905 - 41531870
Alignment:
| Q |
23 |
atcatcatactggatatcaaacatcaatgttaaaga |
58 |
Q |
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| T |
41531905 |
atcatcatactggatatcaaacatcaatgttaaaga |
41531870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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