View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_low_20 (Length: 431)

Name: NF0218_low_20
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_low_20
NF0218_low_20
[»] chr5 (6 HSPs)
chr5 (177-419)||(6520753-6520994)
chr5 (23-134)||(6520597-6520708)
chr5 (290-397)||(39668780-39668886)
chr5 (320-396)||(2078540-2078615)
chr5 (356-396)||(32489156-32489196)
chr5 (364-396)||(11069365-11069397)
[»] chr6 (3 HSPs)
chr6 (320-396)||(6079595-6079670)
chr6 (356-397)||(20430568-20430609)
chr6 (358-396)||(2544930-2544968)
[»] chr1 (11 HSPs)
chr1 (295-396)||(6985615-6985713)
chr1 (320-396)||(4001866-4001941)
chr1 (320-396)||(32079325-32079400)
chr1 (356-396)||(49350473-49350513)
chr1 (317-396)||(47876934-47877013)
chr1 (356-396)||(49527437-49527477)
chr1 (320-396)||(52920999-52921074)
chr1 (356-394)||(9599963-9600001)
chr1 (359-396)||(6039644-6039681)
chr1 (323-396)||(8670807-8670879)
chr1 (364-396)||(52463089-52463121)
[»] chr8 (4 HSPs)
chr8 (306-388)||(30453859-30453941)
chr8 (290-396)||(23491991-23492097)
chr8 (356-396)||(15218283-15218323)
chr8 (356-395)||(16008440-16008479)
[»] chr2 (10 HSPs)
chr2 (320-396)||(1648028-1648103)
chr2 (320-396)||(37520611-37520686)
chr2 (356-393)||(23766906-23766943)
chr2 (356-393)||(23796099-23796136)
chr2 (356-396)||(11992962-11993002)
chr2 (364-396)||(16290806-16290838)
chr2 (356-394)||(45329643-45329681)
chr2 (356-396)||(8561070-8561110)
chr2 (364-396)||(42010643-42010675)
chr2 (365-397)||(43920779-43920811)
[»] chr4 (4 HSPs)
chr4 (320-396)||(2982346-2982422)
chr4 (356-396)||(16000281-16000321)
chr4 (356-396)||(27453166-27453206)
chr4 (364-396)||(38475066-38475098)
[»] chr3 (3 HSPs)
chr3 (311-396)||(31566261-31566345)
chr3 (320-396)||(51450766-51450841)
chr3 (364-395)||(52136378-52136409)
[»] scaffold0279 (1 HSPs)
scaffold0279 (364-396)||(18446-18478)
[»] scaffold0001 (1 HSPs)
scaffold0001 (356-396)||(440139-440179)
[»] chr7 (1 HSPs)
chr7 (364-396)||(46833167-46833199)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 177 - 419
Target Start/End: Original strand, 6520753 - 6520994
Alignment:
Q  177 atggtatgtttattaccaaatgtgtgtataactgtatatgttctgtttggtataagtccnnnnnnncctcttcacttcactgttttaatttatttacttt 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||    
T  6520753 atggtatgtttgttaccaaatgtgtgtataactgtatatgttctgtttggtataagttctttttttcctcttcacttcactgttttaatttatttacttt 6520852  T
Q  277 gcattgatttgcatatgttagcctagctttgcatagcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactt 376  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6520853 gcattgatttgcatatgttagcctagctttgcatagtctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactt 6520952  T
Q  377 tgtcgaatctctatgacatgacatggattactaatgcaacagc 419  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  6520953 tgtcgaatctctatgacatg-catggattactaatgcaacagc 6520994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 6520597 - 6520708
Alignment:
Q  23 atcatcaaattttggtgattttgactcttacttaactaatattagcttaatgacaagtcctttgagctcattttgcatgtttgtatatgaatttcttatt 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6520597 atcatcaaattttggtgcttttgactcttacttaactaatattagcttaatgacaagtcctttgagctcattttgcatgtttgtatatgaatttgttatt 6520696  T
Q  123 tcaatttgaggg 134  Q
    ||||||||||||    
T  6520697 tcaatttgaggg 6520708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 39668886 - 39668780
Alignment:
Q  290 tatgttagcctagctttgcatagcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctcta 389  Q
    ||||||||||| ||| | ||||||| ||| ||||||||| ||||| | |||||||| ||| |    ||||||| ||||||||||||||||||||||||||    
T  39668886 tatgttagccttgctatacatagccggtcccaagcccgggtaaaaggtgagggttgtgttagtcc-tcgacagccaacgtaaaactttgtcgaatctcta 39668788  T
Q  390 tgacatga 397  Q
    ||||||||    
T  39668787 tgacatga 39668780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 2078615 - 2078540
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||||||||| |||||||||| ||| ||   ||||||| ||| |||||||||||||||||||||||||||||    
T  2078615 caagcccggataaaaggagagggttgtgttaggcc-tcgacagccaaagtaaaactttgtcgaatctctatgacatg 2078540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 32489156 - 32489196
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  32489156 tcgacagtcaacgtaaaactttgtcgaatccctatgacatg 32489196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 11069397 - 11069365
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||| |||||||||||||||||||||||||||    
T  11069397 caacgcaaaactttgtcgaatctctatgacatg 11069365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 6079595 - 6079670
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  6079595 caagcccgggtaaaaggagagggttgcgttaggcc-tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 6079670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 20430609 - 20430568
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatga 397  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  20430609 tcgacagccaacgtaaaactttgttgaatctctatgacatga 20430568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 2544968 - 2544930
Alignment:
Q  358 gacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  2544968 gacagtcaacgtaaaactttgtggaatttctatgacatg 2544930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 6985713 - 6985615
Alignment:
Q  295 tagcctagctttgcatagcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgaca 394  Q
    |||||| ||| || |||||| ||| ||||||||||| ||| |||||||||| ||| ||    |||||| |||||||||||||||||||||||||||||||    
T  6985713 tagccttgctatgaatagccggtcccaagcccggatgaaaggagagggttgtgttaggc---cgacagccaacgtaaaactttgtcgaatctctatgaca 6985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 4001866 - 4001941
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   ||||||| |||||||||||||||||||||||||||||||||    
T  4001866 caagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtaaaactttgtcgaatctctatgacatg 4001941  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 32079325 - 32079400
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   ||||||| |||||||||||||||||||||||||||||||||    
T  32079325 caagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtaaaactttgtcgaatctctatgacatg 32079400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 49350513 - 49350473
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  49350513 tcgacagccaacgtaaaactttgtcgaatctctatgacatg 49350473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 47876934 - 47877013
Alignment:
Q  317 tcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| |||||||| |||||| ||| ||| || ||||||||| ||||  | || ||||||||||||||||||||||    
T  47876934 tcacaagcctggataaaaggagaggattgtgttaggcagtcgacagccaacacagaaatttgtcgaatctctatgacatg 47877013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 49527477 - 49527437
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  49527477 tcgacagccaacgtaaaactttgttgaatctctatgacatg 49527437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 52920999 - 52921074
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   | ||||| |||| ||||||||||||||||||||||||||||    
T  52920999 caagcccgggtaaaaggagagggttgtgttaggcctt-gacagccaacataaaactttgtcgaatctctatgacatg 52921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 9599963 - 9600001
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgaca 394  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  9599963 tcgacagccaacgtaaaactttgtcggatctctatgaca 9600001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 6039644 - 6039681
Alignment:
Q  359 acagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  6039644 acagccaacgtaaaactttgttgaatctctatgacatg 6039681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 8670879 - 8670807
Alignment:
Q  323 gcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||| ||||| |||||||||| ||| ||   ||||||| ||| ||||||||||||||||||||||| |||||    
T  8670879 gcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaatgtaaaactttgtcgaatctctataacatg 8670807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 52463121 - 52463089
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||| ||||||||||||||||||||||||||||    
T  52463121 caacttaaaactttgtcgaatctctatgacatg 52463089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 30453941 - 30453859
Alignment:
Q  306 tgcatagcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctct 388  Q
    ||||||||| ||| ||||||||||||||| |||||||||| ||| || ||| ||||  ||||||||||||| |||||||||||    
T  30453941 tgcatagccggtcccaagcccggataaaaagagagggttgtgttaggcagttgacaaccaacgtaaaacttagtcgaatctct 30453859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 396
Target Start/End: Complemental strand, 23492097 - 23491991
Alignment:
Q  290 tatgttagcctagctttgcatagcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctcta 389  Q
    ||||||||||| | | ||||||| || || |||||||  |||||| ||||| |||| ||| ||||||| |||  ||||| |||||||||| |||| ||||    
T  23492097 tatgttagccttgatatgcatagtctatcccaagcccatataaaaggagagagttgtgttaggaagtcaacaaccaacggaaaactttgttgaatttcta 23491998  T
Q  390 tgacatg 396  Q
    |||||||    
T  23491997 tgacatg 23491991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 15218323 - 15218283
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  15218323 tcgatagtcaacgtaaaattttgtcgaatctctatgacatg 15218283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 16008479 - 16008440
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacat 395  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  16008479 tcgacagccaacgtaaaactttgttgaatctctatgacat 16008440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 1648028 - 1648103
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   ||||||| |||||||||||||||||||||||||||||||||    
T  1648028 caagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtaaaactttgtcgaatctctatgacatg 1648103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 37520611 - 37520686
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   ||||||| |||||||||||||||||||||||||||||||||    
T  37520611 caagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtaaaactttgtcgaatctctatgacatg 37520686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 23766943 - 23766906
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgac 393  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  23766943 tcgacagccaacgtaaaactttgtcgaatctctatgac 23766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 23796136 - 23796099
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgac 393  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  23796136 tcgacagccaacgtaaaactttgtcgaatctctatgac 23796099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 11992962 - 11993002
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  11992962 tcgacagccaacataaaactttgtcgaatctctatgacatg 11993002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 16290806 - 16290838
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||||||||||||||    
T  16290806 caacgtaaaactttgtcgaatctctatgacatg 16290838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 45329681 - 45329643
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgaca 394  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  45329681 tcgacagccaacgtaaaactttatcgaatctctatgaca 45329643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 8561110 - 8561070
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| |||||||||||||||| ||||| ||||||||||    
T  8561110 tcgacagccaacgtaaaactttgttgaatccctatgacatg 8561070  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 42010675 - 42010643
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||| ||||||||||    
T  42010675 caacgtaaaactttgtcgaatccctatgacatg 42010643  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 43920811 - 43920779
Alignment:
Q  365 aacgtaaaactttgtcgaatctctatgacatga 397  Q
    |||||||||||||||| ||||||||||||||||    
T  43920811 aacgtaaaactttgtccaatctctatgacatga 43920779  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 2982422 - 2982346
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||||||||| |||||||||||||| || |||| |||| ||  ||||||| | ||| |||||||||||||||    
T  2982422 caagcccggataaaaggagagggttgagttaggtagtcaacagccattgtaaaacctagtcaaatctctatgacatg 2982346  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 16000281 - 16000321
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  16000281 tcgacagtcaacgtaaaactttgttgagtctctatgacatg 16000321  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 27453206 - 27453166
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  27453206 tcgacagccaacgtaaaactttgccgaatctctatgacatg 27453166  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 38475098 - 38475066
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||||| |||||||||||||||||||||    
T  38475098 caacgtaaaacgttgtcgaatctctatgacatg 38475066  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 31566345 - 31566261
Alignment:
Q  311 agcctgtcacaagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||| ||| ||||||||| ||||| |||||||||| ||| ||   ||||||| ||||||| |||||||| ||||||||||||||||    
T  31566345 agccggtcccaagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtagaactttgtagaatctctatgacatg 31566261  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 51450841 - 51450766
Alignment:
Q  320 caagcccggataaaatgagagggttgagttgggaagtcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||||| ||||| |||||||||| ||| ||   ||||||| ||||||||||||||||||||| |||||| ||||    
T  51450841 caagcccgggtaaaaggagagggttgtgttaggcc-tcgacagccaacgtaaaactttgtcgaatatctatggcatg 51450766  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 395
Target Start/End: Original strand, 52136378 - 52136409
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacat 395  Q
    ||||||||||||||||||||||||||||||||    
T  52136378 caacgtaaaactttgtcgaatctctatgacat 52136409  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 18446 - 18478
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||||||||||||||    
T  18446 caacgtaaaactttgtcgaatctctatgacatg 18478  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 440139 - 440179
Alignment:
Q  356 tcgacagtcaacgtaaaactttgtcgaatctctatgacatg 396  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  440139 tcgacagccaacgtaaaactttgtcaaatctctatgacatg 440179  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 46833199 - 46833167
Alignment:
Q  364 caacgtaaaactttgtcgaatctctatgacatg 396  Q
    |||||||||||||||||||||||||||||||||    
T  46833199 caacgtaaaactttgtcgaatctctatgacatg 46833167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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