View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_low_23 (Length: 415)

Name: NF0218_low_23
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_low_23
NF0218_low_23
[»] chr5 (16 HSPs)
chr5 (30-405)||(33904582-33904958)
chr5 (40-205)||(33763363-33763528)
chr5 (41-195)||(33734534-33734688)
chr5 (294-398)||(33867303-33867407)
chr5 (294-397)||(33736435-33736538)
chr5 (48-183)||(33867039-33867174)
chr5 (310-397)||(33698933-33699020)
chr5 (39-183)||(33749004-33749148)
chr5 (295-390)||(33763706-33763801)
chr5 (54-184)||(33698707-33698837)
chr5 (288-397)||(33823135-33823244)
chr5 (39-183)||(33821799-33821943)
chr5 (296-397)||(33680385-33680486)
chr5 (287-396)||(33750168-33750277)
chr5 (63-183)||(33680120-33680240)
chr5 (66-122)||(33846626-33846682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-405)||(149000-149360)
[»] chr7 (2 HSPs)
chr7 (41-184)||(5470128-5470271)
chr7 (297-399)||(5468527-5468629)
[»] chr8 (2 HSPs)
chr8 (43-184)||(21306037-21306178)
chr8 (310-398)||(21306329-21306417)
[»] scaffold0247 (2 HSPs)
scaffold0247 (37-186)||(21871-22020)
scaffold0247 (287-395)||(19852-19960)
[»] scaffold0023 (2 HSPs)
scaffold0023 (63-186)||(90068-90191)
scaffold0023 (294-399)||(88887-88992)
[»] scaffold0193 (3 HSPs)
scaffold0193 (37-186)||(24286-24435)
scaffold0193 (287-395)||(23300-23408)
scaffold0193 (117-186)||(24882-24953)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Original strand, 33904582 - 33904958
Alignment:
Q  30 aacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33904582 aacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggg 33904681  T
Q  130 ttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt-annnnnnn 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |           
T  33904682 ttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagcagttatgcatggtaattttttt 33904781  T
Q  229 gcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904782 gcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttc 33904881  T
Q  329 cttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgtctctg 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  33904882 cttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctcacgcctctg 33904958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 33763363 - 33763528
Alignment:
Q  40 tggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 139  Q
    |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  140 taaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaa 205  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||| ||| |||||    
T  33763463 taaccacctcaatctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaa 33763528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 33734534 - 33734688
Alignment:
Q  41 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 140  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  141 aaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaaca 195  Q
    | ||||||||||||||| |||||||| || ||||||||||||| || ||||||||    
T  33734634 acccacctcaatctacaactttttcgacatctattcaatcctgccaagtgtaaca 33734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 33867303 - 33867407
Alignment:
Q  294 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  33867303 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33867402  T
Q  394 ctcac 398  Q
    |||||    
T  33867403 ctcac 33867407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 33736435 - 33736538
Alignment:
Q  294 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 393  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33736435 tatacctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T
Q  394 ctca 397  Q
    ||||    
T  33736535 ctca 33736538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 33867039 - 33867174
Alignment:
Q  48 tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc 147  Q
    ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| ||| || || || |||||| ||||| ||||||||||||||||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  148 tcaatctacagctttttcggcacctattcaatcctg 183  Q
    |||||||||| ||||| |||||||||||||||||||    
T  33867139 tcaatctacaacttttccggcacctattcaatcctg 33867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 33698933 - 33699020
Alignment:
Q  310 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctca 397  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33698933 ggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctca 33699020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33749004 - 33749148
Alignment:
Q  39 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 138  Q
    ||||||| |||||||||||| |  || ||||||||||| || ||||||||| |||||||||||| |||| |||| || |||||| | ||| |||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  139 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 183  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  33749104 ttaaccatctcaatctacaactttttctgcacctattcagtcctg 33749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 33763706 - 33763801
Alignment:
Q  295 atacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacct 390  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||| ||||||    
T  33763706 atacctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 33763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 33698707 - 33698837
Alignment:
Q  54 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatc 153  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| || || ||||| || |||||   |||| |||||||||| |||||||||||||    
T  33698707 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatc 33698806  T
Q  154 tacagctttttcggcacctattcaatcctgt 184  Q
    |||| ||||| || ||||||||||| |||||    
T  33698807 tacaacttttccgacacctattcaaacctgt 33698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 33823135 - 33823244
Alignment:
Q  288 attcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgca 387  Q
    |||||||||||||| |||||  |||| ||||||||||||||||||||||||||| || ||  ||||||||||||  || |||||||||||||||||||||    
T  33823135 attcattatacctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgca 33823234  T
Q  388 ccttttctca 397  Q
    ||||||||||    
T  33823235 ccttttctca 33823244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33821799 - 33821943
Alignment:
Q  39 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 138  Q
    ||||||| |||||||||||| || || |||||||||||||  ||||||||| ||||||| || | || |||||| || || || || ||| |||||||||    
T  33821799 ttggaagcttacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataat 33821898  T
Q  139 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 183  Q
    ||| ||||||||||||||| |||||||| || |||||||||||||    
T  33821899 ttacccacctcaatctacaactttttcgacatctattcaatcctg 33821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 33680385 - 33680486
Alignment:
Q  296 tacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttct 395  Q
    ||||||||||||  ||||||||||||||||| ||||||||||| || || |||||  |||||||||| || || ||||||||||||||||||||||||||    
T  33680385 tacctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttct 33680484  T
Q  396 ca 397  Q
    ||    
T  33680485 ca 33680486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 396
Target Start/End: Original strand, 33750168 - 33750277
Alignment:
Q  287 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 386  Q
    |||||| ||||||||||||||  |||| ||||||||||||||||||||||||||| |  ||| |||| ||||||| ||| ||||||||| ||||||| |     
T  33750168 cattcactatacctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtccacgt 33750267  T
Q  387 accttttctc 396  Q
    || |||||||    
T  33750268 acgttttctc 33750277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 33680120 - 33680240
Alignment:
Q  63 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 162  Q
    |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    ||| |||||||||| | ||||||||||||||| ||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttt 33680219  T
Q  163 ttcggcacctattcaatcctg 183  Q
    | ||||| |||||||| ||||    
T  33680220 tccggcatctattcaaacctg 33680240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 33846626 - 33846682
Alignment:
Q  66 ttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatg 122  Q
    ||||||||||| || ||||||||| |||||||||||| |||| |||| || ||||||    
T  33846626 ttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatg 33846682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 47 - 405
Target Start/End: Original strand, 149000 - 149360
Alignment:
Q  47 ttacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 146  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  147 ctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggtannnnnnngcatttgctttg--atat 244  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||        |||||||||| |  ||||    
T  149100 ctcaatctacagcttttgcggcacctattcaattctgtcatgtgtaacatataatttaagtaattatgcatggttattttttgcatttgcttcgatatat 149199  T
Q  245 atagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctg 344  Q
    ||||||||| | |||||||||||||| ||||| ||||||   |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |     
T  149200 atagttgttaagtttaactaattgtatgcctagaataaataacattcattttacctgctctttgaggaactaaatgccattttccttccccatacttgtc 149299  T
Q  345 tatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgtctctg 405  Q
     || |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  149300 aatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctcacgcctctg 149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 5470271 - 5470128
Alignment:
Q  41 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 140  Q
    ||||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||||||||  |||||||||||    
T  5470271 ggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataattt 5470172  T
Q  141 aaccacctcaatctacagctttttcggcacctattcaatcctgt 184  Q
    | ||||||||||||||| |||||||| || ||||||||||||||    
T  5470171 atccacctcaatctacaactttttcgacatctattcaatcctgt 5470128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 5468629 - 5468527
Alignment:
Q  297 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctc 396  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||  || |||||||| |||||||||||||||||| ||    
T  5468629 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttc 5468530  T
Q  397 acg 399  Q
    |||    
T  5468529 acg 5468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 21306037 - 21306178
Alignment:
Q  43 aagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaa 142  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| |||  |||||||||||| ||| ||| | || ||||||||||||||||| ||||||||    
T  21306037 aagattacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaa 21306136  T
Q  143 ccacctcaatctacagctttttcggcacctattcaatcctgt 184  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  21306137 ccacctcaatctacaactttttctgcatctattcaatcctgt 21306178  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 21306329 - 21306417
Alignment:
Q  310 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcac 398  Q
    |||||||||| ||||||||||||||| ||| | |  || |||||||||||||||| ||||||||  || |||||||| |||||||||||    
T  21306329 ggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagtagctcatcttccttgtaagtccatgcgccttttctcac 21306417  T

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Target: scaffold0247 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 22020 - 21871
Alignment:
Q  37 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 136  Q
    |||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||| || |||  | ||||| ||||||| |||  |||||||    
T  22020 cctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaata 21921  T
Q  137 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  21920 atttacccacctcaatctacaactttttcgacatctattcaatcctgtca 21871  T

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Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 395
Target Start/End: Complemental strand, 19960 - 19852
Alignment:
Q  287 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 386  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  19960 cattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 19861  T
Q  387 accttttct 395  Q
    |||||||||    
T  19860 accttttct 19852  T

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Target: scaffold0023 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 90191 - 90068
Alignment:
Q  63 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 162  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||| | ||| ||||||| || |||||||| |||||||| ||||    
T  90191 agtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaacttt 90092  T
Q  163 ttcggcacctattcaatcctgtca 186  Q
    |||| |||||||| ||||||||||    
T  90091 ttcgacacctatttaatcctgtca 90068  T

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Target: scaffold0023; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 88992 - 88887
Alignment:
Q  294 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 393  Q
    ||||||||||||| | ||||||| |||||||||||||| ||||||||| |  || || ||||||||||  |||||||| ||||  ||||| | |||||||    
T  88992 tatacctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtacctttt 88893  T
Q  394 ctcacg 399  Q
     |||||    
T  88892 ttcacg 88887  T

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Target: scaffold0193 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 24435 - 24286
Alignment:
Q  37 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 136  Q
    ||||||| | ||||||||||||||| || |||||||||||||  || | |||| ||||||||| || ||||   ||||| |||||||  ||| |||||||    
T  24435 ccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaata 24336  T
Q  137 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||||||||    
T  24335 atttacccatcttaatctacaactttttcgacacctattcaatcctgtca 24286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 395
Target Start/End: Complemental strand, 23408 - 23300
Alignment:
Q  287 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 386  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  23408 cattcgttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 23309  T
Q  387 accttttct 395  Q
    |||||||||    
T  23308 accttttct 23300  T

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Target: scaffold0193; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 24953 - 24882
Alignment:
Q  117 ttgatgttggggcttaaataatttaac--cacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    |||||| ||||| ||||||||||||||  ||||||| ||||||  ||| ||| ||||||||||||| |||||    
T  24953 ttgatggtggggtttaaataatttaaccacacctcagtctacaattttatcgacacctattcaatcatgtca 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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