View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_low_24 (Length: 410)
Name: NF0218_low_24
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_24 |
 | |
|
| [»] scaffold0112 (3 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
| [»] scaffold0759 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0233 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0112 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 40 - 377
Target Start/End: Complemental strand, 26509 - 26177
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaataagggagctatagtgtcagttagtatatggacct |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26509 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaaatatcaccatcaattt-----------tatagtgtcagttagtatatggacct |
26421 |
T |
|
| Q |
140 |
ctctataaattattaaatatagccat--ttcacttttcctaataattaacgtagggagctatagtgtctgctagtatatgcacctctctataaattgttg |
237 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26420 |
ctctataaattattaaatataggcatatttcacttttccaaataattaacgtagggagctatagtgtctgctagtatatgcacctctctataaattgttg |
26321 |
T |
|
| Q |
238 |
catgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattcattcttttg----aacaaacaatgacttattttaagtt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
26320 |
catgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattctttcttttgatcaaacaaacaatgacttatgttaagct |
26221 |
T |
|
| Q |
334 |
tcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
| ||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26220 |
tgttacttcggctgtcttcatgctcaccacattctgtatgtata |
26177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 98 - 377
Target Start/End: Complemental strand, 17749 - 17470
Alignment:
| Q |
98 |
aatttaataagggagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
197 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17749 |
aatttcatgagggagctatagtgtcagttggtatatggacctctctataaattattaaatatagacatttcacttttcctaacaattaacgtagggagct |
17650 |
T |
|
| Q |
198 |
atagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17649 |
atagtgtctgctagtatacgcacctctctataaatttttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
17550 |
T |
|
| Q |
298 |
tcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||| || |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17549 |
tctttcttttgatcaaacaatgacttatgttaaacttgttactttggctgtcttcatgctcaccatattttgtatgtata |
17470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 17766 - 17738
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17766 |
gggaatgaaacaattttaatttcatgagg |
17738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 98 - 377
Target Start/End: Complemental strand, 26778261 - 26777982
Alignment:
| Q |
98 |
aatttaataagggagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
197 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26778261 |
aatttcatgaggtagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
26778162 |
T |
|
| Q |
198 |
atagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
297 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26778161 |
atagtgtctgcttgtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataataaataattttagcttat |
26778062 |
T |
|
| Q |
298 |
tcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
|| ||||||||| ||||||||||||||| ||||| || |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26778061 |
tctttcttttgatcaaacaatgacttatgttaagcttgttactttggctgtcttcatgctcaccacattctgtatgtata |
26777982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 40 - 377
Target Start/End: Original strand, 26729037 - 26729345
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaataagggagctatagtgtcagttagtatatggacct |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26729037 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatca------atttaataagggagctatagtgtcagttagtatatggacct |
26729130 |
T |
|
| Q |
140 |
ctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagctatagtgtctgctagtatatgcacctctctataaattgttgca |
239 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
26729131 |
ctctataaattattaaatatagacatttcacttttcctaataattaacgtagggagcta---tgccagctagtatatgcacctctctataaattgt---- |
26729223 |
T |
|
| Q |
240 |
tgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgacttattttaagtttcctac |
339 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||| |||||||||| ||||| | |||| |
|
|
| T |
26729224 |
----------------tgcaacactaagctaagttcatcacaaataattttagcttattctttattttgatcaaagaatgacttatgttaagctcgctac |
26729307 |
T |
|
| Q |
340 |
tttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26729308 |
tttggctgtcttcatgctcaccacattctgtatgtata |
26729345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 377
Target Start/End: Original strand, 26791746 - 26791925
Alignment:
| Q |
198 |
atagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
297 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26791746 |
atagtgtcagttagtatatgcacctctctataaattcttgcatataacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
26791845 |
T |
|
| Q |
298 |
tcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
|| ||||||||| ||||||||||||||| ||||| || ||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26791846 |
tctttcttttgatcaaacaatgacttatgttaagcttgctaatttggctgtcttcatgctcaccacattctgtatgtata |
26791925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 360
Target Start/End: Original strand, 26834283 - 26834529
Alignment:
| Q |
98 |
aatttaataagggagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
197 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26834283 |
aatttcatgagggagctatagtgtcagttgttatatggacctctctataaattgttaaatatagccatttcacttttcctaacaattaacgtagggagct |
26834382 |
T |
|
| Q |
198 |
atagtgtctgctagtat----atgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagc |
293 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26834383 |
atagtgtctgctagtatatagatagacctctctataaattgt--------------------tacaacactaagctaagttcatatcaaataattttagc |
26834462 |
T |
|
| Q |
294 |
ttattcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcac |
360 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||| || ||||||||||||| ||| ||||||| |
|
|
| T |
26834463 |
ttattctttcttttgatcaaacaatgacttatgttaagcttgctactttggctgttttcatgctcac |
26834529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 26745318 - 26745494
Alignment:
| Q |
200 |
agtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattc |
299 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
26745318 |
agtgtcggttagtatatgcacctctgtataaattcttgcatgtaacaatgaactaatgcaatactgagctaagttcataacaaatgatt--agcttattc |
26745415 |
T |
|
| Q |
300 |
attcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtataa |
378 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
26745416 |
tttcttttgatcaaacaatgacttatgttaagcttgctactttggctgtcttcatgctcactatattctgtatgtataa |
26745494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 26756586 - 26756697
Alignment:
| Q |
98 |
aatttaataagggagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
197 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26756586 |
aatttcatgaggtagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
26756685 |
T |
|
| Q |
198 |
atagtgtctgct |
209 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26756686 |
atagtgtctgct |
26756697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 26791682 - 26791781
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaataagggagctatagtgtcagttagtatatggacct |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26791682 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaattta-----------atagtgtcagttagtatatgcacct |
26791770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 26756569 - 26756597
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26756569 |
gggaatgaaacaattttaatttcatgagg |
26756597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 26778278 - 26778250
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26778278 |
gggaatgaaacaattttaatttcatgagg |
26778250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 26834266 - 26834294
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26834266 |
gggaatgaaacaattttaatttcatgagg |
26834294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 98 - 377
Target Start/End: Original strand, 20622 - 20899
Alignment:
| Q |
98 |
aatttaataagggagctatagtgtcagttagtatatggacctctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagct |
197 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20622 |
aatttcatgagggagctatagtgtcagttggtatatggacctctctataaattgttaaatatagccatttcttttttcctaataattaacgtagggagct |
20721 |
T |
|
| Q |
198 |
atagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttat |
297 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20722 |
atagtgtctgctagtatatggacctct--ataaattgttgcatgtaacaaggaattaatgcaacactaagctaagttcataacaaataattttagcttat |
20819 |
T |
|
| Q |
298 |
tcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
| ||||||||| ||||||||||||||| ||||| || |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
20820 |
tatttcttttgatcaaacaatgacttatgttaagcttgttactttggctgtcttcatgctcaccacattctgtatgtata |
20899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 20605 - 20633
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20605 |
gggaatgaaacaattttaatttcatgagg |
20633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 40 - 377
Target Start/End: Original strand, 1791 - 2114
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaataagggagctatagtgtcagttagtatatggacct |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1791 |
gggaatgaaacaattttaatttcataaggataccacaaaattgttaaatatcatgatcaatttaataagggagctatagtgtcagttagtatatggaccc |
1890 |
T |
|
| Q |
140 |
ctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagctatagtgtctgctagtat----atgcacctctctataaattgt |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
1891 |
ctctataaattattaaacatagccatttcacttttcctaataattaacgtagggagctatagtgtctgctagtatatagatagacctctctacaaattgt |
1990 |
T |
|
| Q |
236 |
tgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgact--tattttaagtt |
333 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||| ||||| | |
|
|
| T |
1991 |
t-------acaat-------------actaagctaagttcataacaaataattttagcttattctttattttgatcaaacaatgacttatatgttaagct |
2070 |
T |
|
| Q |
334 |
tcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2071 |
cgttactttggctgtcttcatgctcaccacattctgtatgtata |
2114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 40 - 377
Target Start/End: Complemental strand, 8019 - 7700
Alignment:
| Q |
40 |
gggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaataagggagctatagtgtcagttagtatatggacct |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8019 |
gggaatgaaacaattttaatttcataaggataccacaaaattgttaaatatcatgatcaatttaataagggagctatagtgtcagttagtatatggac-- |
7922 |
T |
|
| Q |
140 |
ctctataaattattaaatatagccatttcacttttcctaataattaacgtagggagctatagtgtctgctagtat----atgcacctctctataaattgt |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
7921 |
ctctataaattattaaacatagccatttcacttttcctaataattaaagtagggagctatagtgtctgctagtatatagatagacctctctacaaattgt |
7822 |
T |
|
| Q |
236 |
tgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgacttattttaagtttc |
335 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||| ||||| || |
|
|
| T |
7821 |
t-------acaat-------------actaagctaagttcataacaaataattttaacttattctttattttgatcaaacaatgacttatgttaagcttg |
7742 |
T |
|
| Q |
336 |
ctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7741 |
ctaatttggctgtcttcatgctcaccacattctgtatgtata |
7700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 226 - 377
Target Start/End: Original strand, 17364 - 17515
Alignment:
| Q |
226 |
tataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgacttat |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
17364 |
tataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcatatcaaataattttagcttattctttcttttgatcaaacaatgtcttat |
17463 |
T |
|
| Q |
326 |
tttaagtttcctactttggctgtcttcgtgctcaccatattctgtatgtata |
377 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17464 |
gttaagctctctactttggctgtcttcatgctcaccatattctgtatgtata |
17515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 17287 - 17348
Alignment:
| Q |
41 |
ggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaattt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17287 |
ggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaattt |
17348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 13042396 - 13042278
Alignment:
| Q |
259 |
aacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctc |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||| || ||||||||||||| ||| ||||| |
|
|
| T |
13042396 |
aacactaagctaagttcataataaataattttagcttattatttcttttgatcaaacaatgacttatgttaagcttgctactttggctgttttcatgctc |
13042297 |
T |
|
| Q |
359 |
accatattctgtatgtata |
377 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
13042296 |
acgacattctgtatgtata |
13042278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 13050473 - 13050355
Alignment:
| Q |
259 |
aacactaagctaagttcataacaaataattttagcttattcattcttttgaacaaacaatgacttattttaagtttcctactttggctgtcttcgtgctc |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||| || ||||||||||||| ||| ||||| |
|
|
| T |
13050473 |
aacactaagctaagttcataataaataattttagcttattatttcttttgatcaaacaatgacttatgttaagcttgctactttggctgttttcatgctc |
13050374 |
T |
|
| Q |
359 |
accatattctgtatgtata |
377 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
13050373 |
acgacattctgtatgtata |
13050355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 12127213 - 12127308
Alignment:
| Q |
192 |
ggagctatagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataat |
287 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| | |||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
12127213 |
ggagctgtagtgtcagctagtaaatgcatcgctctataaattgatgcatgcaacaatgaactaatgcaacaacaagataagttcataacaaataat |
12127308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 12109344 - 12109442
Alignment:
| Q |
190 |
agggagctatagtgtctgctagtatatgcacctctctataaattgttgcatgtaacaatgaactaatgcaacactaagctaagttcataacaaataatt |
288 |
Q |
| |
|
||||| || ||||| | ||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
12109344 |
agggaactgtagtgccagctagtaaatggaccgctctataaattgatgcatgtaacaatgaactaatgcaacaataagctaagttcatttcaaataatt |
12109442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 12109333 - 12109387
Alignment:
| Q |
96 |
tcaatttaataagggagctatagtgtcagttagtatatggacctctctataaatt |
150 |
Q |
| |
|
|||||||||||||||| || ||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
12109333 |
tcaatttaataagggaactgtagtgccagctagtaaatggaccgctctataaatt |
12109387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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