View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_low_25 (Length: 405)

Name: NF0218_low_25
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_low_25
NF0218_low_25
[»] chr3 (7 HSPs)
chr3 (3-380)||(22808216-22808593)
chr3 (29-129)||(7657967-7658067)
chr3 (22-129)||(2033465-2033572)
chr3 (29-129)||(11404269-11404369)
chr3 (75-134)||(32012965-32013024)
chr3 (23-95)||(17369778-17369851)
chr3 (29-97)||(28733849-28733916)
[»] chr1 (5 HSPs)
chr1 (3-377)||(9752460-9752834)
chr1 (19-136)||(34028581-34028696)
chr1 (29-128)||(43577987-43578085)
chr1 (41-129)||(20997110-20997198)
chr1 (41-129)||(22052350-22052438)
[»] chr6 (1 HSPs)
chr6 (42-271)||(13503256-13503487)
[»] chr5 (3 HSPs)
chr5 (29-128)||(33930629-33930727)
chr5 (81-136)||(34476561-34476616)
chr5 (74-129)||(29318268-29318323)
[»] chr4 (4 HSPs)
chr4 (29-128)||(16918793-16918891)
chr4 (41-129)||(43236151-43236239)
chr4 (70-129)||(14627194-14627253)
chr4 (68-127)||(19099102-19099161)
[»] scaffold0039 (1 HSPs)
scaffold0039 (29-129)||(33625-33725)
[»] chr7 (1 HSPs)
chr7 (22-129)||(18271800-18271907)
[»] scaffold0401 (2 HSPs)
scaffold0401 (74-129)||(11954-12009)
scaffold0401 (74-129)||(16102-16157)
[»] scaffold0005 (1 HSPs)
scaffold0005 (70-129)||(190130-190189)
[»] chr8 (2 HSPs)
chr8 (74-129)||(15183468-15183523)
chr8 (70-120)||(18925473-18925523)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 22808216 - 22808593
Alignment:
Q  3 acaaaacacaaaatccataccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22808216 acaaaacacaaaatccataccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagaccttctcaagagtgagtaaacctaaaattaggtc 22808315  T
Q  103 aaccaagcttatttttaacataatcacccctaacattcaatggaatagtgctacaataaacaaaagtgttcaagcttaatcctatgttagctaaagcatc 202  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22808316 aaccaagcctatttttaacataataacccctaacatccaatggaatagtgctataataaacaaaagtgttcaagcttaatcctatgttagctaaagcatc 22808415  T
Q  203 tgcacaggtatttccttctctataaacatgagaaactacaaaattaaaagaggaaacaatggaaagacagttggaccatctatttcttactctccaagga 302  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  22808416 tgcacaggtatttccttctctacaaacatgagaaactacaaaattaaaagaggaaacaatggaaaggcagttggaccatctatttctgactctccaagga 22808515  T
Q  303 acaagtctagcatcattgaaggctctaacaaacaacatagagtctgattccaaccaaaagtttctccagttttttgat 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  22808516 acaagtctagcatcattgaaggctctaacaaccaacatagagtctgattccaaccaaaggtttcttcagttttttgat 22808593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 7658067 - 7657967
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||| ||||||||  |||||||||||| | || || | |||||||||||||| |||||||||||||||| ||||| | | |||||||||||||||||    
T  7658067 aagattgatacaaaaagagagaagggggacaataccaaaaccttctcaagagtgattaaacctaaaattaggccaacctaacctatttttaacataatca 7657968  T
Q  129 c 129  Q
    |    
T  7657967 c 7657967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 2033465 - 2033572
Alignment:
Q  22 ccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaac 121  Q
    |||||| ||||| | ||||||||  |||||||||||| | || || | |||||||||||||| |||||||||||||||| ||||| ||| |||||||||     
T  2033465 ccaaaaaaagatagatacaaaaagagagaagggggactataccaaaaccttctcaagagtgattaaacctaaaattaggccaacctagcctatttttaat 2033564  T
Q  122 ataatcac 129  Q
    ||||||||    
T  2033565 ataatcac 2033572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 11404369 - 11404269
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||| ||||||||  |||||||||||  | || || | |||||||||||||| |||||||||||||||| ||||| |   |||||||||||||||||    
T  11404369 aagattgatacaaaaagagagaagggggattataccaaaaccttctcaagagtgattaaacctaaaattaggccaacctattctatttttaacataatca 11404270  T
Q  129 c 129  Q
    |    
T  11404269 c 11404269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 32013024 - 32012965
Alignment:
Q  75 caagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcaccccta 134  Q
    ||||||||| |||||||||||||| | ||||||| | |||||||||||||||||| ||||    
T  32013024 caagagtgattaaacctaaaattacgccaaccaaccctatttttaacataatcactccta 32012965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 17369778 - 17369851
Alignment:
Q  23 caaaagaagattgttacaaaaaag-gagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaa 95  Q
    ||||| |||||||||| ||||||  ||||||||||||||||| || | ||||||| | |||| |||||||||||    
T  17369778 caaaaaaagattgttaaaaaaaaaagagaagggggaccaaaccaaaaccttctcaggggtgattaaacctaaaa 17369851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 28733916 - 28733849
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaatt 97  Q
    ||||||| |||||||||| ||||||||||| |  | || | |||||||||||||| |||||||||||||    
T  28733916 aagattgatacaaaaaag-agaagggggactaggccaataccttctcaagagtgattaaacctaaaatt 28733849  T

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Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 377
Target Start/End: Complemental strand, 9752834 - 9752460
Alignment:
Q  3 acaaaacacaaaatccataccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtc 102  Q
    |||| ||||||| |||||| |||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||| | | |||||||||||||||| |    
T  9752834 acaacacacaaattccatatcaaaagaagattgttacaaaaaagaagaaggggggccaagccaagaccttctcaagattaattaaacctaaaattaggcc 9752735  T
Q  103 aaccaagcttatttttaacataatcacccctaacattcaatggaatagtgctacaataaacaaaagtgttcaagcttaatcctatgttagctaaagcatc 202  Q
    |||||||| || ||||||||||||||  | |||| | ||||||||||   ||| ||||||| |||||||| |  ||||| ||||||||||| ||||||||    
T  9752734 aaccaagcctaattttaacataatcagtcttaacctccaatggaataacactaaaataaacgaaagtgtttacacttaaccctatgttagccaaagcatc 9752635  T
Q  203 tgcacaggtatttccttctctataaacatgagaaactacaaaattaaaagaggaaacaatggaaagacagttggaccatctatttcttactctccaagga 302  Q
    |||||||||||||||||||||||  ||||||||||| |||||| | |||||||||||||| |||||||| || |||||||| |||||||  |||||||||    
T  9752634 tgcacaggtatttccttctctatgcacatgagaaacaacaaaactcaaagaggaaacaatagaaagacaattagaccatctgtttcttatcctccaagga 9752535  T
Q  303 acaagtctagcatcattgaaggctctaacaaacaacatagagtctgattccaaccaaaagtttctccagtttttt 377  Q
    ||||| |||||||  |||||||||||||||| |||||| || ||  ||||||||||||  || || |||||||||    
T  9752534 acaagactagcattcttgaaggctctaacaaccaacatggaatcaaattccaaccaaagattacttcagtttttt 9752460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 34028581 - 34028696
Alignment:
Q  19 ataccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttattttt 118  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||||||||||||||| ||||||| | |||||||    
T  34028581 ataccaaaa-aagattgttacaaaaaag-agatgggggaccaaaccataaccttctcaatagtgattaaacctaaaattaggccaaccaaacctattttt 34028678  T
Q  119 aacataatcacccctaac 136  Q
    ||||||||||| ||||||    
T  34028679 aacataatcactcctaac 34028696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 43578085 - 43577987
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||| ||||||||  |||||||||||| | || || | |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||    
T  43578085 aagattgatacaaaaagagagaagggggactataccaa-accttctcaagagtgattaaacctaaaattaggccaacctagcctatttttaacataatca 43577987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 20997198 - 20997110
Alignment:
Q  41 aaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||| ||||||||| | | || || | |||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  20997198 aaaaagaagaaggggggctataccaaaaccttctcaagagtgattaaacctaaaattaggccacccaagcctatttttaacataatcac 20997110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 22052438 - 22052350
Alignment:
Q  41 aaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||| |||| |||||| | || || | |||||||||||||| ||| |||||||||||| || |||||| ||||||||||||||||||    
T  22052438 aaaaagaagaatggggactataccaaaaccttctcaagagtgattaagcctaaaattaggccacccaagcctatttttaacataatcac 22052350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 271
Target Start/End: Complemental strand, 13503487 - 13503256
Alignment:
Q  42 aaaaggagaagggggaccaaacgaagatcttctcaagagtg--agtaaacctaaaattaggtcaaccaagcttatttttaacataatcacccctaacatt 139  Q
    ||||| |||||| ||||||||  |||| |||||||||||||  |||||||| ||||||||  ||||||| | ||||||||||||||||||  ||||| |     
T  13503487 aaaagaagaaggaggaccaaatcaagaccttctcaagagtgtgagtaaaccaaaaattagaccaaccaaacctatttttaacataatcacttctaacttg 13503388  T
Q  140 caatggaatagtgctacaataaacaaaagtgttcaagcttaatcctatgttagctaaagcatctgcacaggtatttccttctctataaacatgagaaact 239  Q
     ||| ||||||||| | |||||| ||| |||||||| ||||| ||||| ||| ||||||||||   ||| ||||||||||||| ||| |||| ||| ||     
T  13503387 taattgaatagtgcaataataaaaaaaggtgttcaaacttaaacctatattaactaaagcatcaatacaagtatttccttctccatatacataagagaca 13503288  T
Q  240 acaaaattaaaagaggaaacaatggaaagaca 271  Q
    |||||||| | |||||||| ||| ||||||||    
T  13503287 acaaaattcatagaggaaataatagaaagaca 13503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 33930629 - 33930727
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||| ||||||||  |||||||||||| | || || | |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||    
T  33930629 aagattgatacaaaaagagagaagggggactataccaa-accttctcaagagtgattaaacctaaaattaggccaacctagcctatttttaacataatca 33930727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 34476616 - 34476561
Alignment:
Q  81 tgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcacccctaac 136  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||    
T  34476616 tgagtaaacctaaaattaggtcaaccaatcttacttttatcataatcactcctaac 34476561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 29318323 - 29318268
Alignment:
Q  74 tcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||| ||||||||||| |||| || |||||| ||||||||||||||||||    
T  29318323 tcaagagtgattaaacctaaaactaggccacccaagcctatttttaacataatcac 29318268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 16918793 - 16918891
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||| ||||||||  |||||||||||| | || || | |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||    
T  16918793 aagattgatacaaaaagagagaagggggactataccaa-accttctcaagagtgattaaacctaaaattaggccaacctagcctatttttaacataatca 16918891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 43236239 - 43236151
Alignment:
Q  41 aaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||| |||||| |||| | || || | |||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  43236239 aaaaagaagaaggaggactataccaaaaccttctcaagagtgattaaacctaaaattaggccacccaagcctatttttaacataatcac 43236151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 14627194 - 14627253
Alignment:
Q  70 cttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||||||| ||||||||||| |||| || || ||| ||||||||||||||||||    
T  14627194 cttctcaagagtgattaaacctaaaagtaggccatcctagcctatttttaacataatcac 14627253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 19099102 - 19099161
Alignment:
Q  68 atcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatc 127  Q
    |||||||||||| ||| || ||||||||||||  ||||| ||||||||||||||||||||    
T  19099102 atcttctcaagaatgattacacctaaaattagaccaaccgagcttatttttaacataatc 19099161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 33625 - 33725
Alignment:
Q  29 aagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatca 128  Q
    ||||||||||||||||| ||||||||||| ||||| || | ||||||| | |||| ||||||||||| |||| ||||  ||| |||||||| ||||||||    
T  33625 aagattgttacaaaaaaagagaagggggagcaaaccaaaaccttctcaggggtgattaaacctaaaactaggccaacttagcctatttttatcataatca 33724  T
Q  129 c 129  Q
    |    
T  33725 c 33725  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 18271800 - 18271907
Alignment:
Q  22 ccaaaagaagattgttacaaaaaaggagaagggggaccaaacgaagatcttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaac 121  Q
    |||||| ||||| | ||||||||  |||||||||||  | || || | |||||||||||||| |||||||||||||||| ||||| ||| |||||||||     
T  18271800 ccaaaaaaagatagatacaaaaagagagaagggggattataccaaaaccttctcaagagtgattaaacctaaaattaggccaacctagcctatttttaat 18271899  T
Q  122 ataatcac 129  Q
    ||||||||    
T  18271900 ataatcac 18271907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 11954 - 12009
Alignment:
Q  74 tcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||| ||||||||||| |||| || |||||| ||||||||||||||||||    
T  11954 tcaagagtgattaaacctaaaactaggccacccaagcctatttttaacataatcac 12009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 16102 - 16157
Alignment:
Q  74 tcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||| ||||||||||| |||| || |||||| ||||||||||||||||||    
T  16102 tcaagagtgattaaacctaaaactaggccacccaagcctatttttaacataatcac 16157  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 190189 - 190130
Alignment:
Q  70 cttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||||||| ||||||||||| |||| || || ||| ||||||||||||||||||    
T  190189 cttctcaagagtgattaaacctaaaagtaggccatcctagcctatttttaacataatcac 190130  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 15183523 - 15183468
Alignment:
Q  74 tcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaacataatcac 129  Q
    |||||||||| ||||||||||| |||| || |||||| ||||||||||||||||||    
T  15183523 tcaagagtgattaaacctaaaactaggccacccaagcctatttttaacataatcac 15183468  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 18925523 - 18925473
Alignment:
Q  70 cttctcaagagtgagtaaacctaaaattaggtcaaccaagcttatttttaa 120  Q
    ||||||||| |||||| |||||||||||||| ||||||||  |||||||||    
T  18925523 cttctcaagtgtgagttaacctaaaattaggccaaccaagtctatttttaa 18925473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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