View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_low_27 (Length: 381)
Name: NF0218_low_27
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_27 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 13042562 - 13042193
Alignment:
| Q |
12 |
agagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13042562 |
agagaccacatatctgcagacgtgctgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga |
13042463 |
T |
|
| Q |
112 |
gatgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg |
211 |
Q |
| |
|
||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13042462 |
gatgaaatgaagtttctgaagcaacctgacaggaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg |
13042363 |
T |
|
| Q |
212 |
catgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13042362 |
catgagtctccaagtcatcaaagacttggaaggagggatgtctgcagaccagatttgttttgcccaagagatattttggcctgcgccatatttgaacaaa |
13042263 |
T |
|
| Q |
312 |
aacgcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac |
381 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13042262 |
aaggcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac |
13042193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 579669 - 579581
Alignment:
| Q |
165 |
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc |
253 |
Q |
| |
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|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| |||||||| |
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|
| T |
579669 |
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatc |
579581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 38622207 - 38621859
Alignment:
| Q |
12 |
agagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga |
111 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
38622207 |
agagaccacatatcttcagaagtgctgaaatgaataggtatattgaggagagaagctaaccaagaccacattttactagcaaaagggcattcaaaaaata |
38622108 |
T |
|
| Q |
112 |
gatgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg |
211 |
Q |
| |
|
|||| || | | |||||| | | ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
38622107 |
gatggaaggaagtttctgttgtagcttgacaggaagagcacattgaaggtaagttgcaacctctaagcattagattatcatctgttgcaagtttattatg |
38622008 |
T |
|
| Q |
212 |
catgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaa |
311 |
Q |
| |
|
|||||| ||||| |||||||| ||||| || || || ||||||||| |||| |||||||||||||| ||||||||||| | || |||||||||||| |
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|
| T |
38622007 |
catgagcctccaggtcatcaatgacttagaggggggaatatctgcacaccaaatttgttttgcccatgagatattttgtcttgtggcatatttgaacatg |
38621908 |
T |
|
| Q |
312 |
aacgcttctttgagagataggacccctgatgcgcagtgtttccaaacca |
360 |
Q |
| |
|
|| |||||||||||||||| |||| |||||| ||||||||||| |||| |
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|
| T |
38621907 |
aaggcttctttgagagataaaacccttgatgcacagtgtttccatacca |
38621859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 23684410 - 23684322
Alignment:
| Q |
165 |
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| || || |||||| ||||||||||||||||||| || ||||| |||||||| |
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|
| T |
23684410 |
ttacaacctctaagagcaaggttatcatcggcagggagcttgttgtgcatgggtctccaagtcatcaaagattttgaaggtgggatatc |
23684322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 23850401 - 23850489
Alignment:
| Q |
165 |
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| || || |||||| ||||||||||||||||||| || ||||| |||||||| |
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|
| T |
23850401 |
ttacaacctctaagagcaaggttatcatcggcagggagcttgttgtgcatgggtctccaagtcatcaaagattttgaaggtgggatatc |
23850489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 9217033 - 9216665
Alignment:
| Q |
13 |
gagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaagag |
112 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
9217033 |
gagaccacatatctgcagaggtgctgaattgaagaggagtattgagaagggaagctagccaagaccacattttagtagcaaaattgcattcaaagaagag |
9216934 |
T |
|
| Q |
113 |
atgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgc |
212 |
Q |
| |
|
|||||| ||| ||||||||| | |||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||| |||||||| ||| |
|
|
| T |
9216933 |
atgaaaggtagtttctgaagaagcttgacaagatgagcacattgaaggtaaattacaacccctaagcattagattttcatctgttgatagtttattgtgc |
9216834 |
T |
|
| Q |
213 |
atgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaaa |
312 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||| || |||| ||||||||||||| |||||||| | ||| || ||| ||||||||||||||||| |
|
|
| T |
9216833 |
atgagcttccaagtcatcaaagacttagagggaggtatgtctgtgcaccagatttgtttagcccaagaaacattctgccctaaaccatatttgaacaaaa |
9216734 |
T |
|
| Q |
313 |
acgcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac |
381 |
Q |
| |
|
| || ||||| | ||||| |||||||||| || |||||||||||||| | |||||||||| ||||| |
|
|
| T |
9216733 |
aggcgtctttaaaagataaagcccctgatgcacaatgtttccaaaccaaactatcctcctttgattcac |
9216665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 35 - 328
Target Start/End: Complemental strand, 27448481 - 27448187
Alignment:
| Q |
35 |
gttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaag-agatgaaatgtattttctgaagc |
133 |
Q |
| |
|
|||||| |||||||| | ||||| |||||||||||||| ||||||| ||| ||||||| || ||||||||||| | |||||| || ||||||| | |
|
|
| T |
27448481 |
gttgaactgaagaggcatgttgaggagagaagctaaccatgaccacaattttatagcaaatggacattcaaaaaaacaaatgaaaggtggtttctgagga |
27448382 |
T |
|
| Q |
134 |
gacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaa |
233 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||||| ||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| |||| ||| |
|
|
| T |
27448381 |
agtctgacaagaaaagcacattgaaggaaggttacaccctctgagcactaggttatcatcagttggaagtttgttgtgcatgagtctccatgtcaataaa |
27448282 |
T |
|
| Q |
234 |
gacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaaaacgcttctttgagaga |
328 |
Q |
| |
|
|| || ||||| |||||||| | |||| | |||||||||||| |||||||| |||| ||||||||||| |||| || ||||| ||||| |
|
|
| T |
27448281 |
gattttgaaggtgggatatcagggcaccatagcgtttttgcccaagaaatattttgtcctgtgccatatttgaatgaaaaagcctctttaagaga |
27448187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 328
Target Start/End: Complemental strand, 48709862 - 48709699
Alignment:
| Q |
165 |
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccaga |
264 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| |||||||||| ||| | |
|
|
| T |
48709862 |
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatctgggctccata |
48709763 |
T |
|
| Q |
265 |
tttgttttgcccaagagatattttggcctgcaccatatttgaacaaaaacgcttctttgagaga |
328 |
Q |
| |
|
| || |||||||| ||||||||||| |||||||| ||||| | ||| ||||| || ||||| |
|
|
| T |
48709762 |
aatccttggcccaagaaatattttggccagcaccatacttgaatagaaaagcttccttaagaga |
48709699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 14775696 - 14775896
Alignment:
| Q |
53 |
attgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaagagatgaaatgtattttctgaagcgacctgacaagaagagcac |
152 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||||| | |||||||||||| | |||||| || |||| | ||||||| || || ||| |
|
|
| T |
14775696 |
attgagaagagatgctagccaagaccacattttggaagcaaaagtgcattcaaaaaataaatgaaaagtggtttcctcataagcctgacaggatgaacac |
14775795 |
T |
|
| Q |
153 |
atagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatat |
252 |
Q |
| |
|
|| || || | |||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
14775796 |
attgaggggaggttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatat |
14775895 |
T |
|
| Q |
253 |
c |
253 |
Q |
| |
|
| |
|
|
| T |
14775896 |
c |
14775896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 11305548 - 11305460
Alignment:
| Q |
165 |
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
11305548 |
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcattaaagattttgaaggtgggatatc |
11305460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 11966837 - 11966767
Alignment:
| Q |
183 |
aggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc |
253 |
Q |
| |
|
||||||||||| | ||||| || || |||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
11966837 |
aggttatcatcggcagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatc |
11966767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 14098763 - 14098839
Alignment:
| Q |
189 |
tcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagat |
265 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
14098763 |
tcatctgttggaagcttattatgcataagcctccataccatcagggacttagatggagggatatctgcagaccagat |
14098839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 24771061 - 24770973
Alignment:
| Q |
150 |
cacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagactt |
238 |
Q |
| |
|
|||||||||||||||| || |||||| |||||| ||||||||| || || |||||||| |||||| ||||||| |||||| ||||| |
|
|
| T |
24771061 |
cacatagaaggtaaatggcatcctctatgcattaagttatcatcagtaggaagtttatttagcatgaatctccaaaccatcaatgactt |
24770973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 41215118 - 41215212
Alignment:
| Q |
137 |
ctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatca |
231 |
Q |
| |
|
||||||||| || | ||| ||||||||||| || ||||||||| | | |||||||| ||||| | |||||| || ||||| ||||||||||||| |
|
|
| T |
41215118 |
ctgacaagaggaacgcattgaaggtaaattgcagcctctaagcgtcaaattatcatcagttggtaatttattgtgtatgagcctccaagtcatca |
41215212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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