View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_29 (Length: 365)
Name: NF0218_low_29
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 25622753 - 25623086
Alignment:
| Q |
1 |
catcaaaaatcttcatatttgttctctttctttctcttttaaaccaaacttgtgatcataaaaaccaaagtattaccaaaatggacacaatgttattagg |
100 |
Q |
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| T |
25622753 |
catcaaaaatcttcatatttgttctctttctttctcttttaaaccaaacttgtgatcataaaaaccaaagtattaccaaaatggacacaatgttattagg |
25622852 |
T |
|
| Q |
101 |
ctctctagacttaaccaagccaacgaccaacgacgttatttcatgcacaaaaccaaacggtacaacagttatccagccgtcgtccacggcaatttcctcc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25622853 |
ctctttagacttaaccaagccaacgaccaacgacgttatttcatgcacaaaaccaaacggtacaacagttatccagccgtcgtccacggcaatttcctcc |
25622952 |
T |
|
| Q |
201 |
accaatgctactctaggccgccacctagcacggaggctagttcaagtcggcgtcacagacattttctccgttcctggtgacttcaacctcacgctactcg |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25622953 |
accaatgctacactaggccgccacctagcacggaggctagttcaagtcggcgtcacggacattttctccgttcctggtgacttcaacctcacgctactcg |
25623052 |
T |
|
| Q |
301 |
actacctcatcgatgaaccaaaacttaatgtaat |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25623053 |
actacctcatcgatgaaccaaaacttaatgtaat |
25623086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 25603746 - 25603858
Alignment:
| Q |
207 |
gctactctaggccgccacctagcacggaggctagttcaagtcggcgtcacagacattttctccgttcctggtgacttcaacctcacgctactcgactacc |
306 |
Q |
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||||| || ||||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||| || |||||||| ||||| || ||||| | | |
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| T |
25603746 |
gctaccctcggccgccacctagcacggaggctagttcaggtcggagtcaccgatgtattctccgttcccggcgacttcaatctcacacttctcgatcatc |
25603845 |
T |
|
| Q |
307 |
tcatcgatgaacc |
319 |
Q |
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||||| ||||||| |
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| T |
25603846 |
tcatcaatgaacc |
25603858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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