View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_low_39 (Length: 350)

Name: NF0218_low_39
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_low_39
NF0218_low_39
[»] chr7 (2 HSPs)
chr7 (165-317)||(1801330-1801482)
chr7 (1-87)||(1801560-1801646)
[»] chr6 (7 HSPs)
chr6 (172-259)||(2909435-2909522)
chr6 (172-259)||(2829399-2829486)
chr6 (172-259)||(2832728-2832815)
chr6 (172-273)||(2842791-2842892)
chr6 (215-259)||(2884610-2884654)
chr6 (172-259)||(2859992-2860079)
chr6 (172-259)||(2865377-2865464)
[»] chr4 (1 HSPs)
chr4 (214-252)||(44396656-44396694)
[»] chr1 (2 HSPs)
chr1 (221-259)||(2178209-2178247)
chr1 (217-273)||(51316111-51316167)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 1801482 - 1801330
Alignment:
Q  165 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801482 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 1801383  T
Q  265 ttccaacaaatcaccaatttcatcaaacaaatcatgtgactcaatatccaaat 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1801382 ttccaacaaatcaccaatttcatcaaacaaataatgtgactcaatatccaaat 1801330  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1801646 - 1801560
Alignment:
Q  1 gttactaaatagatgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801646 gttactaaatagatgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 1801560  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 2909435 - 2909522
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    |||||||||||||||||  | |||||| ||||||||| | |  | ||| |||||||||||||||||||||||||||||||||||||||    
T  2909435 ttgaatcaaattcttcacgcaagtctcaacatcttcaatgatcgtctttggcatcaaattctcagcaacatcagcaggtgtcatatta 2909522  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 2829486 - 2829399
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    |||||||||| ||||||||| ||| || | ||||||||  |  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  2829486 ttgaatcaaactcttcaaacaagtttcaaaatcttcatcaattgactttggcatcaaattttcagcaacatcagcaggtgtcatatta 2829399  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 2832728 - 2832815
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| |||||||||||||||||||||||||||||||||||||||    
T  2832728 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattctcagcaacatcagcaggtgtcatatta 2832815  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 2842892 - 2842791
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 271  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| ||||||||||| ||||||||||||||||||||||||||| |  ||||||||    
T  2842892 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaac 2842793  T
Q  272 aa 273  Q
    ||    
T  2842792 aa 2842791  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 2884610 - 2884654
Alignment:
Q  215 gacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||    
T  2884610 gactttggcatcaaattctcggcaacatcagcaggtgacatatta 2884654  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 2859992 - 2860079
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| |||||||    
T  2859992 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatatta 2860079  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 2865377 - 2865464
Alignment:
Q  172 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| |||||||    
T  2865377 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatatta 2865464  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 44396694 - 44396656
Alignment:
Q  214 agacttaggcatcaaattctcagcaacatcagcaggtgt 252  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  44396694 agacttaggcataagattctcagcaacatcagcaggtgt 44396656  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 2178247 - 2178209
Alignment:
Q  221 ggcatcaaattctcagcaacatcagcaggtgtcatatta 259  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2178247 ggcatcaaattttcagcaacatcagctggtgtcatatta 2178209  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 51316111 - 51316167
Alignment:
Q  217 cttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaacaa 273  Q
    |||||||||||| || | |||||||||||| |||||||||||| |  ||||||||||    
T  51316111 cttaggcatcaagtttttagcaacatcagctggtgtcatattagtctcttccaacaa 51316167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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