View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_4 (Length: 707)
Name: NF0218_low_4
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 94 - 389
Target Start/End: Complemental strand, 34884410 - 34884115
Alignment:
| Q |
94 |
acggggacgcctattcagaatggttcttatgatttgttttctcttatggcttttttgcattttgagccgttttctattaagagttattggcaaagcttgg |
193 |
Q |
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| T |
34884410 |
acggggacgcctattcagaatggttcttatgatttgttttctcttatggcttttttgcattttgagccgttttctattaagagttattggcaaagcttgg |
34884311 |
T |
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| Q |
194 |
ttcagcgacctcttaatcaaggaaaacagactgggatgagtcgattgcaggtacaattcgataacaatgtattgatacttaaaaggtcattctttacttg |
293 |
Q |
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| T |
34884310 |
ttcagcgacctcttaatcaaggaaaacagactgggatgagtcgattgcaggtacaattcgataacaatgtaatgattcttaaagggtcattctttacttg |
34884211 |
T |
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| Q |
294 |
catgtgtaggggattacataaataaactattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgaccaatta |
389 |
Q |
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| T |
34884210 |
catgtgtaggggactacataaataaactattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgaccaatta |
34884115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 462 - 700
Target Start/End: Complemental strand, 34884043 - 34883805
Alignment:
| Q |
462 |
gtaggttttgatgatgtccatctcattgcgaagaaccaaagacactgcattnnnnnnncttccacctaagattgttgagacttgttatgttgaactttca |
561 |
Q |
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| T |
34884043 |
gtaggttttgatgtcggcgatatcattgcgaagaaccaaagacactgcattgggggggcttccacctaagattgttgagacttgttatgttgaactttca |
34883944 |
T |
|
| Q |
562 |
tttgaagaacgtaaactgtatgatgaggttaaagaggaaataaagtcgcttatgatgcatcataacagcaatgacagactagtatctagttattccacta |
661 |
Q |
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| T |
34883943 |
tttgaagaacgtaaactgtatgatgaggttaaagaggaaataaagtcgcttatgatgcatcataacagcaatgacagactagtatctagttattccactg |
34883844 |
T |
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| Q |
662 |
tactaagtatgattctaagacttcgtcagatctgtgctg |
700 |
Q |
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| T |
34883843 |
tactaagtatgattctaagacttcgtcagatctgtgctg |
34883805 |
T |
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