View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_40 (Length: 349)
Name: NF0218_low_40
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_40 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 28316562 - 28316224
Alignment:
| Q |
11 |
cagagaacccaacgataacccattccggcagaaatgccctcaaatcaatcacctctgaaaggctaattgtagttctattcaccgaatttacaacaacgct |
110 |
Q |
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| T |
28316562 |
cagagaacccaacgataacccattccggcagaaatgccctcaaatcaatcacctctgaaaggctaattgtagttctattcaccgaatttacaacaacgct |
28316463 |
T |
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| Q |
111 |
caacctttgtgaaagagcatcataattaattgtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatcttaccgtttgtagcgaacga |
210 |
Q |
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| T |
28316462 |
taacctttgtgaaagagcatcataattaattgtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatctttccgtttgtagcgaacga |
28316363 |
T |
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| Q |
211 |
atggaatttacattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaa |
310 |
Q |
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| T |
28316362 |
atggaatttatattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaa |
28316263 |
T |
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| Q |
311 |
aagcagtctcgggactgaaaaggccaagatacccaccac |
349 |
Q |
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| T |
28316262 |
aagcagtctcaggactgaaaaggccaagatacccaccac |
28316224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 28320867 - 28320531
Alignment:
| Q |
13 |
gagaacccaacgataacccattccggcagaaatgccctcaaatcaatcacctctgaaaggctaattgtagttctattcaccgaatttacaacaacgctca |
112 |
Q |
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| T |
28320867 |
gagaacccaacgataatccaatcaggcagatatcccctcaaatcagccacccatgaaaggctaattgtagttccattcaccgtatttacaatgacgctta |
28320768 |
T |
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| Q |
113 |
acctttgtgaaagagcatcataattaattgtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatcttaccgtttgtagcgaacgaat |
212 |
Q |
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| T |
28320767 |
aagtatcattacgattatcataactaactgtagcaaccaccgttgataaattgctctcaacactatcaattccccatctctccgttgtttcggaacggat |
28320668 |
T |
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| Q |
213 |
ggaatttacattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaaaa |
312 |
Q |
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| T |
28320667 |
ggaatttgcattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgatttataattggtttaaaa |
28320568 |
T |
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| Q |
313 |
gcagtctcgggactgaaaaggccaagatacccaccac |
349 |
Q |
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| T |
28320567 |
gccgtctcggggctgaaaaggccaagatacccaccac |
28320531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 28313422 - 28313088
Alignment:
| Q |
11 |
cagagaacccaacgataacccattccggcagaaatgccctcaaatcaatcacctctgaaaggctaattgtagttctattcaccgaatttacaacaacgct |
110 |
Q |
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|||||||||||||| |||||| || ||||||| | ||||||||||||| | | || ||||||||| |||||| ||||| ||| ||| | | || | |
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| T |
28313422 |
cagagaacccaacgctaaccccgtcgggcagaacttccctcaaatcaatttcatgagagaggctaattttagttccattcaaggaacttaaatctacatt |
28313323 |
T |
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| Q |
111 |
caacctttgtgaaagagcatcataattaattgtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatcttaccgtttgtagcgaacga |
210 |
Q |
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||| |||||||| || || ||| ||| ||||||||||||| |||||||| ||| || | | |||||||||||| ||||| || || ||||| | |
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| T |
28313322 |
taactggtgtgaaagtgcctcgtaactaacggtagcaaccaccggtgttaaaaagttcacaacgttgtcaattccccattttaccattgttaccgaacta |
28313223 |
T |
|
| Q |
211 |
atggaatttacattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaa |
310 |
Q |
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| |||||||||| |||||||||||||||| || ||||| ||||||| ||| || || |||||||| ||||||||||||||||||| | |||||| |
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| T |
28313222 |
cttgaatttacataaatacccacatgcgcaactgtatggtccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattttgaaaggtattaa |
28313123 |
T |
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| Q |
311 |
aagcagtctcgggactgaaaaggccaagataccca |
345 |
Q |
| |
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|| ||||||||||||| | ||| |||||||||||| |
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| T |
28313122 |
aaacagtctcgggactcacaagaccaagataccca |
28313088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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