View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_44 (Length: 310)
Name: NF0218_low_44
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_44 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 70 - 310
Target Start/End: Original strand, 35749306 - 35749546
Alignment:
| Q |
70 |
atcatcaataacattacatcataagtcactgattcgatcaatgtgatcatgattggccttcttgttagaaagagtcataaggtaactacaaattcaagca |
169 |
Q |
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| T |
35749306 |
atcatcaataacattacatggtaagtcactgattcgatcaatgtgatcatgattggccttcttgttagacagagtcataaggtaactacaaattcaagca |
35749405 |
T |
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| Q |
170 |
agcacaagtgtaaatattacaatccacaccacaaagatctgagtgtaacttgaagttggtactaaaaagtttgagttgtaaattaagttacagaaatttt |
269 |
Q |
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| T |
35749406 |
agcacaagtgtaaatattacaatccacactacaaagatctgagtataacttgaagttggtactaaaaagtttgagttgtaaattaagttacagaaatttc |
35749505 |
T |
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| Q |
270 |
aagactcaagtcaagcatgttggaaagattcagacttcgat |
310 |
Q |
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| T |
35749506 |
aagactcaagtcaagcatgttggaaagattcagacttcgat |
35749546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 35743002 - 35743054
Alignment:
| Q |
137 |
gaaagagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac |
189 |
Q |
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| T |
35743002 |
gaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac |
35743054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 16865382 - 16865281
Alignment:
| Q |
72 |
catcaataacattacatcataagtcactgattcgatcaatgtgatca---tgattggccttcttgttagaaagagtcataaggtaactacaaattcaagc |
168 |
Q |
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||||||| ||||||| | |||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
16865382 |
catcaatgacattacttggtaagtcactgattcgatcaaggtgatcaccgtaattggccttcttgttagacagagtcataagtgaactacaaattcaagc |
16865283 |
T |
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| Q |
169 |
aa |
170 |
Q |
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|| |
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| T |
16865282 |
aa |
16865281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 3688 - 3789
Alignment:
| Q |
72 |
catcaataacattacatcataagtcactgattcgatcaatgtgat---catgattggccttcttgttagaaagagtcataaggtaactacaaattcaagc |
168 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||| | || ||||||||| | |||| ||||||||||| |
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| T |
3688 |
catcaatgacattacatggtaagtcactgattcgatcaatgtgatcaccatgattggccctcttctcggacagagtcataggtgaactgcaaattcaagc |
3787 |
T |
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| Q |
169 |
aa |
170 |
Q |
| |
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|| |
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|
| T |
3788 |
aa |
3789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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