View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_5 (Length: 598)
Name: NF0218_low_5
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 4 - 489
Target Start/End: Original strand, 46429388 - 46429888
Alignment:
| Q |
4 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagatgttatacctcccaatctct-aagtccctcatgcaataccgccagaa |
102 |
Q |
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| T |
46429388 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagacgttatacctcccaatctcttaagtccctcatgcaataccgccagaa |
46429487 |
T |
|
| Q |
103 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagga |
202 |
Q |
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| T |
46429488 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagga |
46429587 |
T |
|
| Q |
203 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaactt-------------caacaagtagatga |
289 |
Q |
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| T |
46429588 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacagataaatgcaacaggtagatga |
46429687 |
T |
|
| Q |
290 |
ttgtgtaataatctact-nnnnnnnctgttttcatgtagagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttgaaaa |
388 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46429688 |
ttgtgtaataatctactaaaaaaaactgctttcatgtagagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttgaaaa |
46429787 |
T |
|
| Q |
389 |
aattgagtgctgatcaaacaaattacaatggaactctgattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttc |
488 |
Q |
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| T |
46429788 |
aactgagtgctgatcaaacaaattacaatggaactctgattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttc |
46429887 |
T |
|
| Q |
489 |
a |
489 |
Q |
| |
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| |
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| T |
46429888 |
a |
46429888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 46426146 - 46426204
Alignment:
| Q |
223 |
cattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacaa |
281 |
Q |
| |
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||||| ||| |||||||||||||||| || ||||||||||||| |||| |||||||||| |
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| T |
46426146 |
cattcatcagaaatgtcaagaagtaagtcaggtaaatagtaaatttaacacttcaacaa |
46426204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 477
Target Start/End: Original strand, 46434568 - 46434696
Alignment:
| Q |
345 |
cattgatatacaaacatcaaattgcagctaatatcagttgaaaaaatt-gagtgctgatcaaacaaattacaatggaactctgattgaacattaagaaga |
443 |
Q |
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|||| ||||||||| |||| | |||||||| |||| ||| ||||| | ||| | ||||| ||||||||||||||||| | | | |||||||||||| |
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| T |
46434568 |
catttatatacaaatatcacactgcagctactatcggtttaaaaagctcgagcgttgatcgaacaaattacaatggaattgtta----acattaagaaga |
46434663 |
T |
|
| Q |
444 |
tgacactaaacaacttattattaccttcaactgt |
477 |
Q |
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| T |
46434664 |
t-acactaaactacttattagtaccttcaactgt |
46434696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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