View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_low_52 (Length: 260)
Name: NF0218_low_52
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_52 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 28316004 - 28316235
Alignment:
| Q |
29 |
accattcaacttactaaagtagaaaacggcataaacaagccatttagtgttggcagagcctcttatgctattccaatacacctttatgaccctaaaattg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28316004 |
accattcaacttactaaagtagaaaacggcataaacaagccatttagtgttggcagagcctcttatgctattccaatacacctttatgaccctaaaattg |
28316103 |
T |
|
| Q |
129 |
gtcttgtaagttttacaaccacattctcttttattgtaagatcaaatggacaaatcgtcggagatggaattgcatttttcattgttgcaccaaatcactc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
28316104 |
gtcttgtaagttttacaaccacattctcttttattgtaagatcaaatggacaaatcgtcggagatggaattgcatttttcattgttggacctaatcactc |
28316203 |
T |
|
| Q |
229 |
gaagattccagaatcttcgagtggtgggtatc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28316204 |
gaagattccagaatcttcgagtggtgggtatc |
28316235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 28320311 - 28320542
Alignment:
| Q |
29 |
accattcaacttactaaagtagaaaacggcataaacaagccatttagtgttggcagagcctcttatgctattccaatacacctttatgaccctaaaattg |
128 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
28320311 |
accattcaacttactaaagtaaataacggcataaacatgccatatagtgttggcagagcctcttatgctattccaatacgcctttttgaccctgcaattg |
28320410 |
T |
|
| Q |
129 |
gtcttgtaagttttacaaccacattctcttttattgtaagatcaaatggacaaatcgtcggagatggaattgcatttttcattgttgcaccaaatcactc |
228 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| || | || |||||||||||| |
|
|
| T |
28320411 |
gacttgctagttttacaaccacattctcttttcttgtaacatcaaatggacaaagtaaaggagatggaattgcattttttatggctggaccaaatcactc |
28320510 |
T |
|
| Q |
229 |
gaagattccagaatcttcgagtggtgggtatc |
260 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |
|
|
| T |
28320511 |
gaagatccctgaatcttcgagtggtgggtatc |
28320542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 28312866 - 28313095
Alignment:
| Q |
28 |
caccattcaacttactaaagtagaaaacggcataaacaagccatttagtgttggcagagcctcttatgctattccaatacacctttatgaccctaaaatt |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||| ||| | ||||| ||||||||||||||| | ||||||||| ||||| ||||| ||||| |
|
|
| T |
28312866 |
caccattcaacttactaatatagaaaacgatacaaacatgccttatagtgcgggcagagcctcttatattcttccaatacgcctttgggaccccaaaatc |
28312965 |
T |
|
| Q |
128 |
ggtcttgtaagttttacaaccacattctcttttattgtaagatcaaatggacaaa-tcgtcggagatggaattgcatttttcattgttgcaccaaatcac |
226 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||| | ||| |||| ||||| || | || | |||| || ||||||||| |||||||| ||||| |
|
|
| T |
28312966 |
ggtcttgcgaattttacaaccacattctcttttcttgttacatcgaatgaacaaagtcct-ggtgttggagtttcatttttca---ttgcaccatatcac |
28313061 |
T |
|
| Q |
227 |
tcgaagattccagaatcttcgagtggtgggtatc |
260 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |
|
|
| T |
28313062 |
tcgaagatatcagaatcttcgagtgatgggtatc |
28313095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2063 times since January 2019
Visitors: 2396