View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_53 (Length: 258)
Name: NF0218_low_53
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 28179333 - 28179542
Alignment:
| Q |
29 |
aatattggcatagaatcggataatacgtatcttcatgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatgcacttc |
128 |
Q |
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| T |
28179333 |
aatattggggtagaaccggataatacgta----catgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatgcacttc |
28179428 |
T |
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| Q |
129 |
gaagaaatgaatggatcaatgtggagattacatgtatgtgtctttgataatgatatcacatcttatagaatttggaatccatgtattaaagccgtaaagt |
228 |
Q |
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| T |
28179429 |
gaagaaatgaatggatcaatgtggagattacatgtgtgtgtctttgataatggtatca---cctatagaatttggaatccatgtattaaagccgtaaagt |
28179525 |
T |
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| Q |
229 |
agcatgacggacattca |
245 |
Q |
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||||||||||| ||||| |
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| T |
28179526 |
agcatgacggatattca |
28179542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 28154818 - 28154975
Alignment:
| Q |
86 |
ctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacatgtatgtgtctttgataatgatatc |
185 |
Q |
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|||||| | ||||| ||||||| | ||| ||||||||||||| | ||||||||||||| |||| ||||||||||| | || ||||||| |||| | | |
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| T |
28154818 |
ctggaggatatgcggttcaattctatactgcacaatgcacttctgaaaaatgaatggatccatgtagagattacatgcaggt--ctttgatgatgacaac |
28154915 |
T |
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| Q |
186 |
acatcttatagaatttggaatccatgtattaaagccgtaaagtagcatgacggacattca |
245 |
Q |
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|| ||| ||| |||||||||||||||||||||| | ||||||||||| |||| ||||| |
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| T |
28154916 |
actcgttacagattttggaatccatgtattaaagcagaaaagtagcatggcggatattca |
28154975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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