View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_55 (Length: 254)
Name: NF0218_low_55
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 41805470 - 41805679
Alignment:
| Q |
32 |
gcaaaggcaagaaagggggaa-tcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagag |
130 |
Q |
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| T |
41805470 |
gcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagag |
41805569 |
T |
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| Q |
131 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
230 |
Q |
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| T |
41805570 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
41805669 |
T |
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| Q |
231 |
aggaattcat |
240 |
Q |
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|||||||||| |
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| T |
41805670 |
aggaattcat |
41805679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 41799088 - 41799261
Alignment:
| Q |
35 |
aaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaag |
134 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| |
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| T |
41799088 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaag |
41799187 |
T |
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| Q |
135 |
aggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcac |
208 |
Q |
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| T |
41799188 |
aggaaggcatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatcac |
41799261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 41812301 - 41812513
Alignment:
| Q |
32 |
gcaaaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagaga |
131 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
41812301 |
gcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagaga |
41812400 |
T |
|
| Q |
132 |
aagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaa |
231 |
Q |
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||||||| || || ||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||| | |||| |||||| || |
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| T |
41812401 |
aagaggaaggaatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaa |
41812500 |
T |
|
| Q |
232 |
ggaattcatctca |
244 |
Q |
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|| | |||||||| |
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| T |
41812501 |
gggaatcatctca |
41812513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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