View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_low_58 (Length: 253)

Name: NF0218_low_58
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_low_58
NF0218_low_58
[»] chr8 (8 HSPs)
chr8 (1-224)||(39086859-39087091)
chr8 (1-58)||(2744040-2744097)
chr8 (1-57)||(19715703-19715760)
chr8 (1-58)||(4125001-4125058)
chr8 (1-62)||(13468718-13468779)
chr8 (1-47)||(7839241-7839287)
chr8 (1-36)||(36994499-36994534)
chr8 (1-41)||(12958079-12958119)
[»] chr1 (9 HSPs)
chr1 (1-62)||(36806718-36806779)
chr1 (1-57)||(18428120-18428176)
chr1 (1-65)||(46864198-46864262)
chr1 (1-56)||(42297421-42297476)
chr1 (1-46)||(16756189-16756234)
chr1 (1-38)||(6607691-6607728)
chr1 (1-62)||(15642562-15642623)
chr1 (14-46)||(789833-789865)
chr1 (1-57)||(44913216-44913272)
[»] chr3 (11 HSPs)
chr3 (1-62)||(25224806-25224867)
chr3 (1-58)||(8757451-8757508)
chr3 (1-58)||(30995942-30995999)
chr3 (1-62)||(46725531-46725592)
chr3 (1-62)||(38331235-38331296)
chr3 (1-62)||(48204284-48204345)
chr3 (1-54)||(55123204-55123257)
chr3 (1-57)||(27763828-27763884)
chr3 (2-58)||(40318426-40318482)
chr3 (2-47)||(39950320-39950365)
chr3 (1-57)||(22288342-22288398)
[»] chr6 (3 HSPs)
chr6 (12-62)||(21910322-21910372)
chr6 (1-62)||(12836870-12836931)
chr6 (1-33)||(9536874-9536906)
[»] chr7 (13 HSPs)
chr7 (1-58)||(31492210-31492267)
chr7 (1-57)||(28665197-28665253)
chr7 (1-58)||(29059912-29059969)
chr7 (2-55)||(36821060-36821113)
chr7 (2-54)||(35707954-35708006)
chr7 (1-57)||(11486722-11486778)
chr7 (1-62)||(19477225-19477283)
chr7 (1-47)||(24172316-24172362)
chr7 (1-54)||(21747021-21747074)
chr7 (5-54)||(28537497-28537546)
chr7 (5-62)||(32470029-32470086)
chr7 (1-58)||(45778971-45779028)
chr7 (1-33)||(29428794-29428826)
[»] chr5 (6 HSPs)
chr5 (1-58)||(10592034-10592091)
chr5 (1-58)||(5123475-5123532)
chr5 (4-62)||(25983775-25983833)
chr5 (1-54)||(30784967-30785020)
chr5 (1-58)||(22187975-22188032)
chr5 (1-57)||(31113441-31113497)
[»] chr4 (8 HSPs)
chr4 (1-58)||(31307043-31307100)
chr4 (1-62)||(9012377-9012438)
chr4 (1-40)||(13948587-13948626)
chr4 (1-47)||(38766196-38766242)
chr4 (2-47)||(14854713-14854758)
chr4 (9-67)||(35972458-35972516)
chr4 (1-62)||(33529364-33529425)
chr4 (1-37)||(45994629-45994665)
[»] chr2 (6 HSPs)
chr2 (1-62)||(5394503-5394564)
chr2 (1-56)||(42745095-42745150)
chr2 (1-54)||(17981604-17981657)
chr2 (1-56)||(31579208-31579263)
chr2 (1-47)||(25423851-25423897)
chr2 (1-58)||(37092172-37092229)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-57)||(29130-29186)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39086859 - 39087091
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaataaatcaaaacgatcataagcgttttttctattccaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39086859 cacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacccaaataaatcaaaacgatcataagcgttttttctattccaga 39086958  T
Q  101 atgcgaaccgaactctcgaccttctta---------tgcatagctctcccatctcgatcaccaaatcatccttatatcctctatcattcaaatgatctta 191  Q
    ||| |||||||||||||||||||||||         ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  39086959 atgtgaaccgaactctcgaccttcttatcactctactgcatagctctcccatctcaatcaccaaatcatccttatatcctctaccattcaaatgatctta 39087058  T
Q  192 gcatgatttctatttattcatgatatttggatt 224  Q
    |||||||||||||||||||||||||||||||||    
T  39087059 gcatgatttctatttattcatgatatttggatt 39087091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2744040 - 2744097
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  2744040 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 2744097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19715760 - 19715703
Alignment:
Q  1 cacaatgctcgaggg-attagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  19715760 cacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacac 19715703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4125058 - 4125001
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| | ||||||||    
T  4125058 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacacc 4125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13468779 - 13468718
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||||||||||| ||||||||||| |||||||| | ||||| ||||| ||||||||||||||    
T  13468779 cacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaa 13468718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7839287 - 7839241
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||    
T  7839287 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 7839241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36994534 - 36994499
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36994534 cacaaggctcgagggattagtctctgcagttgcacg 36994499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12958119 - 12958079
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggag 41  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  12958119 cacaatgctcgagggattagtctccgcagtagcgcgcggag 12958079  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36806718 - 36806779
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  36806718 cacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaa 36806779  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18428176 - 18428120
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||    
T  18428176 cacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 46864198 - 46864262
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaataa 65  Q
    ||||||| ||||||||||||||||||||||||| |||  || ||||||| |||||||||||||||    
T  46864198 cacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacccaaataa 46864262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42297476 - 42297421
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 56  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||    
T  42297476 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16756189 - 16756234
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatac 46  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||    
T  16756189 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 16756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6607728 - 6607691
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcg 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  6607728 cacaatgctcgagggattagtctccgcagctgcacgcg 6607691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15642562 - 15642623
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||||||| ||||| |||| |||||||| ||||||| ||||| | |||||| |||||    
T  15642562 cacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaa 15642623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 789833 - 789865
Alignment:
Q  14 ggattagtctctgcagttgcacgcggagaatac 46  Q
    ||||||||||| |||||||||||||||||||||    
T  789833 ggattagtctcggcagttgcacgcggagaatac 789865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44913216 - 44913272
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    ||||||||||||| ||||||||||||||||| | ||| ||| ||||||  |||||||    
T  44913216 cacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacac 44913272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25224806 - 25224867
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  25224806 cacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaa 25224867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8757451 - 8757508
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  8757451 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 8757508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30995999 - 30995942
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  30995999 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacc 30995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46725531 - 46725592
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||| ||||||||||||||| ||||| | ||||||| |||| |||||||||||||||    
T  46725531 cacaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaa 46725592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38331235 - 38331296
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||| | |||||||||||||| |||||||||||||||| ||||| | |||||| |||||    
T  38331235 cacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaa 38331296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48204345 - 48204284
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||||||||| |||||||||| || |||||||| ||||||| ||||| | ||||||||||||    
T  48204345 cacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaa 48204284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 55123204 - 55123257
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    |||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||    
T  55123204 cacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgattta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27763828 - 27763884
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    |||||||||||||||||||||||| |||||||| ||| ||| ||| | |||||||||    
T  27763828 cacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacac 27763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  2 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||| |||||||||||||||| |||||||| ||||||| ||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 39950320 - 39950365
Alignment:
Q  2 acaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    ||||||||||| ||||||||||| ||||||||| |||||| |||||    
T  39950320 acaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22288342 - 22288398
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    |||||| ||| ||| |||||||||||||||||  ||||||| ||||| |||||||||    
T  22288342 cacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacac 22288398  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 21910322 - 21910372
Alignment:
Q  12 agggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21910322 agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaa 21910372  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12836931 - 12836870
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||| ||||||||||||||  ||||||| ||||||| ||||| |||||| |||||||    
T  12836931 cacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaa 12836870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9536874 - 9536906
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgc 33  Q
    |||||||||||||||||||||||| ||||||||    
T  9536874 cacaatgctcgagggattagtctccgcagttgc 9536906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31492210 - 31492267
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  31492210 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31492267  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28665197 - 28665253
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||    
T  28665197 cacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacac 28665253  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29059912 - 29059969
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    ||||||||| |||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  29059912 cacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 29059969  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  2 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttac 55  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35707954 - 35708006
Alignment:
Q  2 acaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    |||||||||||||||||||||||||||||||| || |||| ||||| ||||||    
T  35707954 acaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11486778 - 11486722
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    |||||||||| || ||||||||||| ||||||| ||||||| ||||| |||||||||    
T  11486778 cacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacac 11486722  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19477283 - 19477225
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||| |||||||||||||| ||||||||  |||||| ||| ||||||||||||||||    
T  19477283 cacaatgct-gagggattagtctccgcagttgc--gcggaggatagctggtttacacccaaa 19477225  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24172316 - 24172362
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    |||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  24172316 cacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21747074 - 21747021
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    |||||| ||||||||||||||||  |||||||  ||||||| ||||||||||||    
T  21747074 cacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 28537497 - 28537546
Alignment:
Q  5 atgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    ||||| |||||||||||||| ||||||||||||| || ||||| ||||||    
T  28537497 atgcttgagggattagtctccgcagttgcacgcgaaggatacccggttta 28537546  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 32470029 - 32470086
Alignment:
Q  5 atgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||| ||||||| |  |||||||||||||||| ||| |||||||| |||||||    
T  32470029 atgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaa 32470086  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45778971 - 45779028
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||| ||||||||||||||||| ||||||||    |||| ||||||||||||||||    
T  45778971 cacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacacc 45779028  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29428826 - 29428794
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgc 33  Q
    ||||||| |||||||||||||||||||||||||    
T  29428826 cacaatgttcgagggattagtctctgcagttgc 29428794  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10592034 - 10592091
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||    
T  10592034 cacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacacc 10592091  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5123532 - 5123475
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||  |||||||||    
T  5123532 cacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacacc 5123475  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 25983775 - 25983833
Alignment:
Q  4 aatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||| ||||| |||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  25983775 aatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaa 25983833  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30785020 - 30784967
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    ||||||| || ||||||||||||| |||||||| ||||||| ||||||||||||    
T  30785020 cacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22188032 - 22187975
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||| || |||||||||||||| |||||||| ||||||| ||||| || |||||||    
T  22188032 cacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacacc 22187975  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31113441 - 31113497
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    |||||| ||||||||||||||||| |||||||| |||| || ||||| | |||||||    
T  31113441 cacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacac 31113497  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31307100 - 31307043
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  31307100 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31307043  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9012377 - 9012438
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||| | |||| |||||||    
T  9012377 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaa 9012438  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13948626 - 13948587
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcgga 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13948626 cacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38766196 - 38766242
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||    
T  38766196 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 14854713 - 14854758
Alignment:
Q  2 acaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  14854713 acaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 35972458 - 35972516
Alignment:
Q  9 tcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaataaat 67  Q
    |||||||||||||||| ||||||||  |||||| |||||| ||||||||| ||| ||||    
T  35972458 tcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaaaat 35972516  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33529364 - 33529425
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    |||||| || |||||||||||||| |||||||| | ||||| |||| || ||||||||||||    
T  33529364 cacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaa 33529425  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45994629 - 45994665
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgc 37  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  45994629 cacaatgctcgagagattagtctccgcagttgcacgc 45994665  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5394503 - 5394564
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacccaaa 62  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||  | ||||||||||||    
T  5394503 cacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaa 5394564  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42745150 - 42745095
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 56  Q
    ||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||||||    
T  42745150 cacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17981604 - 17981657
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggttta 54  Q
    ||||||||||||| |||||||||| |||||||| ||||||| ||||| ||||||    
T  17981604 cacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31579263 - 31579208
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttaca 56  Q
    |||||||||||||| |||||| || |||||||| ||||||| ||||| ||||||||    
T  31579263 cacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25423851 - 25423897
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacc 47  Q
    |||||||||||||||||||||||| |||||||| || |||| |||||    
T  25423851 cacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37092229 - 37092172
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacacc 58  Q
    |||| ||||||||||||||||||| |||||||  | ||||| ||||| ||||||||||    
T  37092229 cacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29186 - 29130
Alignment:
Q  1 cacaatgctcgagggattagtctctgcagttgcacgcggagaatacctggtttacac 57  Q
    ||||||||||| ||||||||||||  ||||||| ||||||| ||||| | |||||||    
T  29186 cacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacac 29130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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