View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_59 (Length: 252)
Name: NF0218_low_59
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1496250 - 1496024
Alignment:
| Q |
1 |
ttacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1496250 |
ttacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaacgatggccttgacaatatcaatg |
1496151 |
T |
|
| Q |
101 |
agacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496150 |
agacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgat |
1496051 |
T |
|
| Q |
201 |
atcatgacaattttccagtaattgttg |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
1496050 |
atcatgacaattttccagtaattgttg |
1496024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1517830 - 1517606
Alignment:
| Q |
1 |
ttacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1517830 |
ttacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatgatggccttgacaatatcaatg |
1517731 |
T |
|
| Q |
101 |
agacaagaacatcactgttcac---attactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgt |
197 |
Q |
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|||||||||||||||||||||| | |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1517730 |
agacaagaacatcactgttcacaataatactacaatttctcaaattgatcttttgtagttgtgcacagttctctaccacatgcctaactcccttctctgt |
1517631 |
T |
|
| Q |
198 |
gatatcatgacaattttccagtaat |
222 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
1517630 |
gacatcatgacaattttccagtaat |
1517606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1534322 - 1534124
Alignment:
| Q |
1 |
ttacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1534322 |
ttacatccttggcgcaataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttgacaatatcaatg |
1534223 |
T |
|
| Q |
101 |
agacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtga |
199 |
Q |
| |
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|| ||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1534222 |
aggcaagaacatcacttttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactcccttctctgtga |
1534124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 12121772 - 12121674
Alignment:
| Q |
17 |
ataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgagacaagaacatcac |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| ||||||||| | ||| |||||||||||||||| |||||||||||| |||||||||||| |
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| T |
12121772 |
ataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgatggccttgaaaatatcaatgaggcaagaacatcac |
12121674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 1489676 - 1489494
Alignment:
| Q |
17 |
ataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgagacaagaacatcact |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||| || |||||||| || ||| | || ||||||||||| |||||||||||| ||||||||||| |
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| T |
1489676 |
ataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatc |
1489577 |
T |
|
| Q |
117 |
gttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtga |
199 |
Q |
| |
|
| ||| | || || || ||||||||||||| ||||||||| || || |||| ||||||| | |||||||||||||||| |
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| T |
1489576 |
atgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtga |
1489494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 1530108 - 1530063
Alignment:
| Q |
84 |
ccttgacaatatcaatgagacaagaacatcactgttcacattactg |
129 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
1530108 |
ccttgacatgatcaatgaggcaagaacatcactgttcacattactg |
1530063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 558269 - 558373
Alignment:
| Q |
4 |
catccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgaga |
103 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||| |||| || || ||| ||||||||||| ||| |||||||||| ||||| | ||| ||||||| |
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| T |
558269 |
catcctttacgcaataagagctccatctctctgtcgctgaaacgacaaggatatggagttgttaactttctcaatgatggtcttgaaagtattaatgaga |
558368 |
T |
|
| Q |
104 |
caaga |
108 |
Q |
| |
|
||||| |
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|
| T |
558369 |
caaga |
558373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 1508331 - 1508220
Alignment:
| Q |
4 |
catccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgaga |
103 |
Q |
| |
|
|||||||| || ||||| |||||||||| | ||| |||| |||||| | | ||| |||||| ||| |||| ||||||||||| |||||||||||| |
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| T |
1508331 |
catccttgacgtgataagtgttccatctctctatcgctgaaacgataaccaagaggaattgttatttttctcaacgatggccttgaaaatatcaatgagg |
1508232 |
T |
|
| Q |
104 |
caagaacatcac |
115 |
Q |
| |
|
|||||||||||| |
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|
| T |
1508231 |
caagaacatcac |
1508220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 1538095 - 1537985
Alignment:
| Q |
4 |
catccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgaga |
103 |
Q |
| |
|
|||||||| || ||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||| | || ||||||||||| |||||||||||| |
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|
| T |
1538095 |
catccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacgatggccttgaaaatatcaatgagg |
1537996 |
T |
|
| Q |
104 |
caagaacatca |
114 |
Q |
| |
|
|||||||||| |
|
|
| T |
1537995 |
taagaacatca |
1537985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 1513657 - 1513621
Alignment:
| Q |
79 |
gatggccttgacaatatcaatgagacaagaacatcac |
115 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
1513657 |
gatggccttgaaaatatcaatgaggcaagaacatcac |
1513621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 44575810 - 44575648
Alignment:
| Q |
17 |
ataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaatgatggccttgacaatatcaatgagacaagaacatcact |
116 |
Q |
| |
|
|||||||||||||||| | ||| |||| || ||||| |||| |||||| ||| |||||||||||||||| | |||||| ||| |||||||||||| |
|
|
| T |
44575810 |
ataagagttccatctcttggtcactgaaatcatcacgatatggaattgttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacg |
44575711 |
T |
|
| Q |
117 |
gttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatg |
179 |
Q |
| |
|
| ||||||| ||||||| |||||||| |||| |||||| ||||| ||||||||||| |
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|
| T |
44575710 |
atgcacattatcacaatttctcaaattgagctctctcggttgtgtgcagttttctaccacatg |
44575648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 12845530 - 12845578
Alignment:
| Q |
170 |
ctaccacatgcctaactcccttctctgtgatatcatgacaattttccag |
218 |
Q |
| |
|
||||||| ||||| |||||||||||||| | ||||| |||||||||||| |
|
|
| T |
12845530 |
ctaccacttgcctcactcccttctctgtaacatcattacaattttccag |
12845578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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