View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_6 (Length: 573)
Name: NF0218_low_6
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 104 - 476
Target Start/End: Original strand, 32494016 - 32494388
Alignment:
| Q |
104 |
tcatcattactacataggagactaatatttttactttcaaaacacattgctatttactaatttagtagaactgcattgttgcccaaatgtaattatccta |
203 |
Q |
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| T |
32494016 |
tcatcattactacataggagactaatatttttactttcagaacacattgctatttactaatttagtagaactgcattgttgcccaaatgtaattatccta |
32494115 |
T |
|
| Q |
204 |
tactgtaataaatagtgataataaaataataatcattcgaagacagttatatttcatcaacatgcaatatacaggtggaattgtaccttgacagcagcag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32494116 |
tactgtaataaatagtgataataaaataataatcattcgaagacagttatatttcatcaacatgcaatatacaggtggaattgtaccttgacagcagcag |
32494215 |
T |
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| Q |
304 |
aaagaaatctatgagctattgactccatcccatcctcctctgtcacaactgcctgcaaaaccaataaggcaatcaaaaaatggcaaattcatgatcttgt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32494216 |
aaagaaatctatgagctattgactccatcccatcctcctctgtcacaattgcctgcaaaaccaataaggcaatcaaaaaatggcaaattcatgatcttgt |
32494315 |
T |
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| Q |
404 |
taggtctatttatataagttaaaacttaaaaattagttctagccataaagaggccaagttggatttactcgtg |
476 |
Q |
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| T |
32494316 |
taggtctatttatataagttaaaacttaaaaattagttctagccataaagaggccaagttggatttactcgtg |
32494388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 538 - 573
Target Start/End: Original strand, 32494450 - 32494485
Alignment:
| Q |
538 |
catttttctttatgcgagtatgctaacagcattctt |
573 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32494450 |
catttttctttatgcgagtatgctaacagcattctt |
32494485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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