View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_66 (Length: 244)
Name: NF0218_low_66
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18296187 - 18295983
Alignment:
| Q |
1 |
gaatgtatattgacttgctccataagtaatctcatattaggactcttattaggcgaatcttgagcgattgatgaacacttatcagtgataaagttagaga |
100 |
Q |
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| T |
18296187 |
gaatgtatattgacttgctccataagtaatctcatattaggactcttattaggcgaatcttgagcgattgatgaacacttatcagtgataaagttagaga |
18296088 |
T |
|
| Q |
101 |
ctcttgctgagagctgagaatgaatgttatgaggaatatgcaagaccatatataacaagaggcgaggctcaccacacgaagcatacatcgaaaagttgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |
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|
| T |
18296087 |
ctcttgctgagagctgagaatgaatgttacgaggaatatgcaagaccatatataacaag-----aggctcaccacactaagcatccatcgaaaagttgac |
18295993 |
T |
|
| Q |
201 |
ctgacgacca |
210 |
Q |
| |
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||||| |||| |
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|
| T |
18295992 |
ctgaccacca |
18295983 |
T |
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