View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_8 (Length: 511)
Name: NF0218_low_8
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 32 - 498
Target Start/End: Original strand, 41805470 - 41805943
Alignment:
| Q |
32 |
gcaaaggcaagaaagggggaa-tcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagag |
130 |
Q |
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| T |
41805470 |
gcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagag |
41805569 |
T |
|
| Q |
131 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805570 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
41805669 |
T |
|
| Q |
231 |
aggaattcatatcaaagactcgccggggccagagagcaatgtgaacccatctatannnnnnnnatgcaactttgtccaattaggtactgtcgtgatttga |
330 |
Q |
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| T |
41805670 |
aggaattcatatcaaagactcgccggggccagagagcagtgtgaacccatctatattttttttatgcaactttgtccaattaggtactgtcgtgatttga |
41805769 |
T |
|
| Q |
331 |
caaacatgagtatgtgtatagttatannnnnnnccctgtat------caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgt |
424 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805770 |
caaacatgagtatgtgtatagttatatttttttccctgtatcagtagcaaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgt |
41805869 |
T |
|
| Q |
425 |
cttattgttttgttcagtatagaacgttgggttaacatgtcccactatcaaaattttccagttcttacccgtct |
498 |
Q |
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| T |
41805870 |
cttattgttttgttcagtatagaacgctgggttaacatgtcccactatcaaaattttccagttcttacccgtct |
41805943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 41799088 - 41799321
Alignment:
| Q |
35 |
aaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaag |
134 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| |
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| T |
41799088 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaag |
41799187 |
T |
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| Q |
135 |
aggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaagga |
234 |
Q |
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|||| || || ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||| | | |||| ||| ||||| |
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| T |
41799188 |
aggaaggcatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaagga |
41799287 |
T |
|
| Q |
235 |
attcatatcaaagactcgccggggccagagagca |
268 |
Q |
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| T |
41799288 |
aatcatatcaaagacacgcaggggccagagagca |
41799321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 41812301 - 41812535
Alignment:
| Q |
32 |
gcaaaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagaga |
131 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
41812301 |
gcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagaga |
41812400 |
T |
|
| Q |
132 |
aagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaa |
231 |
Q |
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||||||| || || ||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||| | |||| |||||| || |
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| T |
41812401 |
aagaggaaggaatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaa |
41812500 |
T |
|
| Q |
232 |
ggaattcatatcaaagactcgccggggccagagag |
266 |
Q |
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|| | |||| |||||||||| |||||||||||| |
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| T |
41812501 |
gggaatcatctcaaagactcaaaggggccagagag |
41812535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 375 - 498
Target Start/End: Original strand, 41799488 - 41799611
Alignment:
| Q |
375 |
agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatca |
474 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | ||||||||||| ||| | |
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| T |
41799488 |
agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtcccattatta |
41799587 |
T |
|
| Q |
475 |
aaattttccagttcttacccgtct |
498 |
Q |
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|| ||| ||| ||||||||||||| |
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| T |
41799588 |
aattttgccaattcttacccgtct |
41799611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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