View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-1 (Length: 766)
Name: NF0219-INSERTION-1
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-1 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 14353611 - 14353186
Alignment:
| Q |
8 |
aaaacatatattgtcgaaaatcgaataagagacctctttctaaagaatacatagacacttattacaacactttttcatttgaatgattttaatatggatg |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14353611 |
aaaacatatattgtcgaaaatcgaataagagatctctttctaaagaatacatagacacttattacaacactttttcatttgaatgattttaatatggatg |
14353512 |
T |
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| Q |
108 |
nnnnnnnttattctaaaagtgaactcttatatta-tttagtaaaataatacattcgtcctcgtttttaaaacttaccattttttaaatccatgttagaag |
206 |
Q |
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| T |
14353511 |
aaaaaaattattctaaaagtgaactcttatattattttagtaaaataatacattcgtcctcgtttttaaaacttaccattttttaaatccatgttagaag |
14353412 |
T |
|
| Q |
207 |
caccctaaacccttaaagatagnnnnnnnnnnnnnnngagagagaacccttaaagatagttaacacaccaaaatattatataatattgatatgtcgaaag |
306 |
Q |
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| T |
14353411 |
caccctaaacccttaaagatag---ttttttttttttgagagagaacccttaaagatagttaacacaccaaaatattatataatattgatatgtcgaaag |
14353315 |
T |
|
| Q |
307 |
tcatagatgtttaactagataagtctaaaacaatctcaacnnnnnnnntatattgaaaaaatagctgaaattctattaatgaattatcgaacacattgaa |
406 |
Q |
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| T |
14353314 |
tcatagatgtttaactagataagtctaaaacaatctcaacaaaaaaaatatattgaaaaaatagctgaaattctattaatgaattatcgaacacattgaa |
14353215 |
T |
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| Q |
407 |
tcaagaaattatacagacattgctagatt |
435 |
Q |
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| T |
14353214 |
tcaagaaattatacagacattgctagatt |
14353186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 500 - 766
Target Start/End: Complemental strand, 14353121 - 14352856
Alignment:
| Q |
500 |
caaatagatcaattgtctatgttctttcaaaaaacaattcaattgtctatgtatggaaatttaaatgtatctttagggatacaaatttaaattctttcat |
599 |
Q |
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| T |
14353121 |
caaataaatcaattgtctatgttctctcaaaaaacaattcaattgtctatgtatggaaatttaaatgtatctttagggatacaaatttaaattctttcat |
14353022 |
T |
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| Q |
600 |
tctaaatgatattgttgcataaaaatagtgagttagaaatattctttaccggacttcgaaccacaatagatgggttagcacccgagttatggaggtcata |
699 |
Q |
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| T |
14353021 |
tctaaatgatattgttgcataaaaatagtgagttagaaatattctttaccggacttcgaaccacaatagatgggttagcacccgagttatggaggtcata |
14352922 |
T |
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| Q |
700 |
agcaatctccattcctgagttaccacatcccaactaccaaaacctcttttgtttcatattttgaacc |
766 |
Q |
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| T |
14352921 |
agcaatctccattcctgagttaccacat-ccaactaccaaaacctcttttgttttatattttgaacc |
14352856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 572 - 766
Target Start/End: Original strand, 43886125 - 43886318
Alignment:
| Q |
572 |
ttagggatacaaatttaaattctttcattctaaatgatattgttgcataaaaatagtgagttagaaatattctttaccggacttcgaaccacaatagatg |
671 |
Q |
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||||||||||||||||||||| ||||||| | |||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||| | ||||| | |
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| T |
43886125 |
ttagggatacaaatttaaattatttcattgtgaatgatattgttgcatgaaaagagtgagttagaaatgttctttaccggacttcaaacgatgatagacg |
43886224 |
T |
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| Q |
672 |
ggttagcacccgagttatggaggtcataagcaatctccattcctgagttaccacatcccaactaccaaaacctcttttgtttcatattttgaacc |
766 |
Q |
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| T |
43886225 |
ggtaagcaccccagttatggagatcataagcaatctccatttatgagttaccaca-cccaactaccaaaacctcttttgattcatattttgaacc |
43886318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 43885901 - 43885986
Alignment:
| Q |
259 |
aagatagttaacacaccaaaatattatataatattgatatgtcgaaagtcatagatgtttaactagataagtctaaaacaatctcaa |
345 |
Q |
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||||||||||||| || |||||||| || || |||||||| |||||||| || ||| | ||| |||||| |||||| |||||||||| |
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| T |
43885901 |
aagatagttaacatacgaaaatattgtacaacattgatat-tcgaaagttatggatatctaaatagataggtctaatacaatctcaa |
43885986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 43885865 - 43885902
Alignment:
| Q |
185 |
ttttttaaatccatgttagaagcaccctaaacccttaa |
222 |
Q |
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| T |
43885865 |
ttttttatatccatgatagaagcaccctaaacccttaa |
43885902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 645 - 766
Target Start/End: Complemental strand, 12380407 - 12380287
Alignment:
| Q |
645 |
ttaccggacttcgaaccacaatagatgggttagcacccgagttatggaggtcataagcaatctccattcctgagttaccacatcccaactaccaaaacct |
744 |
Q |
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| T |
12380407 |
ttaccggatttcgaatgacaatggaagcgctagcaccccaattgtggaggtcataagcaatctccattcctgagttaccaca-cccaactaccaaaacat |
12380309 |
T |
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| Q |
745 |
cttttgtttcatattttgaacc |
766 |
Q |
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| T |
12380308 |
tttttgattcgtattttgaacc |
12380287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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