View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0219-INSERTION-10 (Length: 711)
Name: NF0219-INSERTION-10
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-10 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 157 - 670
Target Start/End: Original strand, 39188936 - 39189443
Alignment:
| Q |
157 |
tcaaatatctctcaagacataaacatgcaaagttacgatgatgactaaaatattacataataatttaatagcaatcataattagaaggattctcaccaag |
256 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39188936 |
tcaaatatctctcaagatataaacatgcaaagttatgatgatgactaaaatattacataataatttaatagcaatcataattagaagtattctcaccaag |
39189035 |
T |
|
| Q |
257 |
gatttttctcactttagtcaagtcatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatgtgttttatccaaagcaagt |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39189036 |
gatttttctcactttagtcaagtcatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatgtgttttatccgaagcaagt |
39189135 |
T |
|
| Q |
357 |
tttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatccaaagcaagc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
39189136 |
tttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaactttaaagttgagccgtttttgttgttcaatccaaagcaagc |
39189235 |
T |
|
| Q |
457 |
tgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgaaatgnnnnnnnnnnn |
556 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39189236 |
tgaattggccaattagaaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgagatg-------aaaa |
39189328 |
T |
|
| Q |
557 |
nnnnnnntaaatgaacgatcataacataaattataattgtcgaaaagcttatctat-aaattaacgaaatttcaatataattcatgaaattgaaagtttt |
655 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
39189329 |
agaaaaataaatgaacgatcataacataaattataagtgttgaaaaacttatctataaaattaacaaaatttcaatataatttatgaaattgaaagtttt |
39189428 |
T |
|
| Q |
656 |
caatcatacgagcgc |
670 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
39189429 |
caatcataccagcgc |
39189443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 157 - 663
Target Start/End: Complemental strand, 41261212 - 41260725
Alignment:
| Q |
157 |
tcaaatatctctcaagacataaacatgcaaagttacgatgatgactaaaatattacataataatttaatagcaatcataattagaaggattctcaccaag |
256 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| | |||| || |||||||||||||| |
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| T |
41261212 |
tcaaatatctctcaatacataaacatgcaaagttatgatcatgactaaaatactacataataatttaataaaagtcat-----gagggattctcaccaag |
41261118 |
T |
|
| Q |
257 |
gatttttctcactttagtcaagtcatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatg-----tgttttatccaaag |
351 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
41261117 |
gatttttctcactttagtcaagttatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatgatatgtgttttatccgaag |
41261018 |
T |
|
| Q |
352 |
caagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatccaaag |
451 |
Q |
| |
|
||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41261017 |
caagttta-attctagagcttcaagattggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatccaaag |
41260919 |
T |
|
| Q |
452 |
caagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgaaatgnnnnnn |
551 |
Q |
| |
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||| ||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||||||| ||||||| || |
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|
| T |
41260918 |
caaactgaattggccaattagaaaagatatagtacgatacccaggagacattgtatttgtcagtgcactctcctatgcaccagtacctggaa-------- |
41260827 |
T |
|
| Q |
552 |
nnnnnnnnnnnntaaatgaacgatcataacataaattataattgtcgaaaagcttatcta-taaattaacgaaatttcaatataattcatgaaattgaaa |
650 |
Q |
| |
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||||||||||||| ||| |||||||||| ||||| | | ||| || | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
41260826 |
-----------aaaaatgaacgatcaaaacttaaattataagtgtcggataacttgtcgagaaaattaacgaaatttcaatataattcatgaaattgaaa |
41260738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 157 - 543
Target Start/End: Original strand, 28459890 - 28460278
Alignment:
| Q |
157 |
tcaaatatctctcaagacataaacatgca--aagttacgatgatgactaaaatatt--acataataatttaatagcaatcataattagaa-ggattctca |
251 |
Q |
| |
|
|||||||||||| ||| |||||||| || |||||| ||||||||| || |||| || |||||||| |||| || ||||||||| || ||||| ||| |
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| T |
28459890 |
tcaaatatctctatagatataaacatacacaaagttatgatgatgacaaatatatataacttaataattgaataacagtcataattaaaacggattatca |
28459989 |
T |
|
| Q |
252 |
ccaaggatttttctcactttagtcaagtcatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatgtgttttatccaaag |
351 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
28459990 |
ccgaggatttttctcactttcgtcaagtcatttgtgacca-tgttgttgtctcattatgaacaatacaaattgcttttatggtatgtgttttatctgaag |
28460088 |
T |
|
| Q |
352 |
caagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatccaaag |
451 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
28460089 |
caagttttgattctagagcatcaagatcgacaccttgaccccattcactttctacaacatcaatcttaaagttgaggcatttttgttgttcaatccaaag |
28460188 |
T |
|
| Q |
452 |
caagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgaaa |
543 |
Q |
| |
|
||| |||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28460189 |
caaactgaattggccaatta--aaaaatacactacgatccccaagagacaatgtatttgtcaatgcactctcccatgcaccgatacctgaaa |
28460278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 575 - 664
Target Start/End: Original strand, 28460295 - 28460385
Alignment:
| Q |
575 |
tcataacataaattataattgtcgaaaagctt-atctataaa-ttaacgaaatttcaatataattcatgaaattgaaagttttcaatcatac |
664 |
Q |
| |
|
||||||| |||||||||| ||||| | | ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28460295 |
tcataacttaaattataagtgtcggacaacttgatctataaaattaacgaaatttcaatataattcatgaaattgaaag-tttcaatcatac |
28460385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 39188799 - 39188848
Alignment:
| Q |
11 |
acttcatgtgcacacaatcaacaaggtattaaaaatttaggtatcacaaa |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39188799 |
acttcatgtgcacacaatcaacaaggtattaaaaatttgggtatcacaaa |
39188848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 39188843 - 39188890
Alignment:
| Q |
114 |
cacaaatacatggaaaatttgaaagtttcaccaatgctaataatcaaa |
161 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
39188843 |
cacaaatatatggaaaatttcaaagtttcaccaatgccaataatcaaa |
39188890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 28459798 - 28459848
Alignment:
| Q |
108 |
agataacacaaatacatggaaaatttgaaagtttcaccaatgctaataatc |
158 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||||| ||||||| |
|
|
| T |
28459798 |
agataacacaaatacatgaaaaatttggaattttcaccaatgccaataatc |
28459848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 708
Target Start/End: Original strand, 39189501 - 39189538
Alignment:
| Q |
671 |
atttttcaatttcaattttagtaggatgtgtttaagtc |
708 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39189501 |
atttttcaatttcaatcttagtaggatgtgtttaagtc |
39189538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 41261314 - 41261258
Alignment:
| Q |
105 |
acaagataacacaaatacatggaaaatttgaaagtttcaccaatgctaataatcaaa |
161 |
Q |
| |
|
||||| || |||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
41261314 |
acaaggtatcacaaatacaaggaaaatttggaagtttcaccaatggcaataatcaaa |
41261258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 708
Target Start/End: Complemental strand, 41260665 - 41260628
Alignment:
| Q |
671 |
atttttcaatttcaattttagtaggatgtgtttaagtc |
708 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
41260665 |
atttttcaatttcaatcttagtaggacgtgtttaagtc |
41260628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 275 - 542
Target Start/End: Complemental strand, 16791150 - 16790883
Alignment:
| Q |
275 |
caagtcatttgtgacccctgttgttgtctcattgtgaacaatacaaattgcctttatggtatgtgttttatccaaagcaagttttgattctagtgcatca |
374 |
Q |
| |
|
||||| ||| ||||| || |||| |||||||| |||||||| ||||| |||||||| || |||| ||| ||||||||||||||||||| || |
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|
| T |
16791150 |
caagttattggtgacaccagttgcagtctcattatgaacaatgcaaatagcctttatagtgtgtgcagaatcagaagcaagttttgattctagaatgtcg |
16791051 |
T |
|
| Q |
375 |
agatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatccaaagcaagctgaattggccaattagga |
474 |
Q |
| |
|
||||| ||||| | |||||||||||||| |||||||| || ||||| || ||||||| || || |||| ||||||||| |||||||||||||| | || |
|
|
| T |
16791050 |
agatcagcaccacggccccattcactttccacaacatcgacattaaatttaaggcgttgctgctgatcaacccaaagcaaactgaattggccaatcacga |
16790951 |
T |
|
| Q |
475 |
aagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgaa |
542 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16790950 |
aagatacaatacgatctccaggtgacaatgtgtttgtcagagcactctcccaagcaccggtacctgaa |
16790883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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