View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219-INSERTION-11 (Length: 739)

Name: NF0219-INSERTION-11
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219-INSERTION-11
NF0219-INSERTION-11
[»] chr1 (25 HSPs)
chr1 (259-737)||(51734633-51735105)
chr1 (8-204)||(51734377-51734573)
chr1 (283-425)||(19811082-19811221)
chr1 (312-402)||(51515636-51515727)
chr1 (311-403)||(7907935-7908028)
chr1 (312-401)||(34626867-34626956)
chr1 (312-379)||(14623129-14623196)
chr1 (312-425)||(19810769-19810879)
chr1 (341-403)||(33879869-33879931)
chr1 (341-403)||(33964324-33964386)
chr1 (339-425)||(40566337-40566421)
chr1 (283-423)||(5087831-5087968)
chr1 (312-403)||(12581434-12581526)
chr1 (312-423)||(18998633-18998742)
chr1 (312-403)||(12410327-12410418)
chr1 (363-481)||(41590547-41590663)
chr1 (314-400)||(41590322-41590407)
chr1 (361-425)||(51188885-51188947)
chr1 (283-403)||(6868027-6868146)
chr1 (343-403)||(31305664-31305724)
chr1 (431-481)||(19809966-19810016)
chr1 (341-403)||(45264614-45264676)
chr1 (354-403)||(17419751-17419800)
chr1 (312-401)||(33248423-33248512)
chr1 (312-401)||(33268595-33268684)
[»] chr5 (15 HSPs)
chr5 (312-504)||(4796280-4796477)
chr5 (312-425)||(31973505-31973616)
chr5 (312-425)||(16275164-16275274)
chr5 (335-403)||(17016184-17016253)
chr5 (283-403)||(31973216-31973335)
chr5 (343-403)||(27760344-27760404)
chr5 (451-498)||(904744-904791)
chr5 (361-423)||(15844297-15844357)
chr5 (341-403)||(873787-873849)
chr5 (341-403)||(28010207-28010269)
chr5 (341-403)||(37995725-37995787)
chr5 (354-403)||(1028184-1028233)
chr5 (354-403)||(13843661-13843710)
chr5 (354-403)||(13843977-13844026)
chr5 (354-403)||(20811418-20811467)
[»] chr8 (14 HSPs)
chr8 (312-423)||(38887023-38887132)
chr8 (283-475)||(30590342-30590538)
chr8 (312-403)||(28488423-28488514)
chr8 (312-401)||(25971348-25971437)
chr8 (312-425)||(39590621-39590730)
chr8 (312-403)||(34529909-34530000)
chr8 (332-403)||(23027596-23027667)
chr8 (339-401)||(44933174-44933236)
chr8 (365-425)||(16213207-16213265)
chr8 (343-403)||(20298607-20298667)
chr8 (343-403)||(21085239-21085299)
chr8 (341-403)||(23027919-23027981)
chr8 (334-423)||(26642531-26642618)
chr8 (341-403)||(31766952-31767014)
[»] chr6 (12 HSPs)
chr6 (283-425)||(1205935-1206074)
chr6 (312-405)||(9602076-9602169)
chr6 (312-403)||(1205641-1205732)
chr6 (339-400)||(130761-130823)
chr6 (341-403)||(32215859-32215921)
chr6 (343-403)||(10418429-10418489)
chr6 (343-403)||(24055200-24055260)
chr6 (312-402)||(31965-32055)
chr6 (341-379)||(22889683-22889721)
chr6 (341-379)||(22911289-22911327)
chr6 (354-403)||(1408975-1409024)
chr6 (448-481)||(19712412-19712445)
[»] chr4 (20 HSPs)
chr4 (293-427)||(48046261-48046392)
chr4 (312-425)||(30491023-30491133)
chr4 (312-402)||(26942679-26942769)
chr4 (275-403)||(46332624-46332752)
chr4 (330-419)||(3137021-3137108)
chr4 (341-403)||(53738299-53738361)
chr4 (313-403)||(54595152-54595242)
chr4 (313-403)||(54595468-54595558)
chr4 (343-403)||(15665106-15665166)
chr4 (343-403)||(45427343-45427403)
chr4 (340-402)||(3137726-3137787)
chr4 (312-402)||(26942464-26942554)
chr4 (431-481)||(26942880-26942930)
chr4 (341-403)||(43972306-43972368)
chr4 (354-403)||(991168-991217)
chr4 (354-403)||(50857976-50858025)
chr4 (354-403)||(50858292-50858341)
chr4 (340-401)||(52043171-52043232)
chr4 (354-403)||(53740146-53740195)
chr4 (341-402)||(56509560-56509621)
[»] chr7 (23 HSPs)
chr7 (332-425)||(30610877-30610968)
chr7 (312-427)||(39079698-39079811)
chr7 (296-425)||(422732-422857)
chr7 (431-498)||(10406577-10406644)
chr7 (312-403)||(23721065-23721156)
chr7 (319-403)||(41387459-41387543)
chr7 (312-403)||(41709940-41710031)
chr7 (312-425)||(12840643-12840754)
chr7 (431-481)||(32000863-32000913)
chr7 (331-422)||(28359024-28359114)
chr7 (343-403)||(257358-257418)
chr7 (343-403)||(43167984-43168044)
chr7 (363-425)||(14092254-14092314)
chr7 (363-425)||(14402272-14402332)
chr7 (431-498)||(41710064-41710131)
chr7 (332-422)||(46753069-46753157)
chr7 (283-397)||(3973054-3973167)
chr7 (431-497)||(12305041-12305107)
chr7 (366-427)||(16015478-16015537)
chr7 (341-403)||(28909983-28910045)
chr7 (361-403)||(41389277-41389319)
chr7 (366-427)||(14595950-14596009)
chr7 (319-423)||(39080014-39080116)
[»] chr3 (15 HSPs)
chr3 (312-428)||(51917802-51917916)
chr3 (312-403)||(662648-662739)
chr3 (315-425)||(39225096-39225208)
chr3 (312-401)||(54861447-54861536)
chr3 (343-403)||(4255463-4255523)
chr3 (341-407)||(24860147-24860213)
chr3 (314-403)||(34250443-34250532)
chr3 (343-403)||(13769382-13769442)
chr3 (312-403)||(14170090-14170182)
chr3 (343-403)||(41380677-41380737)
chr3 (343-403)||(43101462-43101522)
chr3 (343-403)||(45443233-45443293)
chr3 (343-403)||(54368992-54369052)
chr3 (442-497)||(40337868-40337923)
chr3 (354-403)||(44573290-44573339)
[»] chr2 (13 HSPs)
chr2 (311-422)||(5511875-5511984)
chr2 (316-402)||(18183392-18183478)
chr2 (281-425)||(26760897-26761038)
chr2 (440-497)||(9889311-9889368)
chr2 (354-403)||(11339787-11339836)
chr2 (343-403)||(18901955-18902015)
chr2 (314-390)||(21373907-21373983)
chr2 (341-403)||(15820192-15820254)
chr2 (354-403)||(3976562-3976611)
chr2 (354-403)||(3977094-3977143)
chr2 (312-397)||(9889423-9889508)
chr2 (319-427)||(39583429-39583535)
chr2 (354-403)||(43169206-43169255)
[»] scaffold0054 (1 HSPs)
scaffold0054 (341-379)||(11142-11180)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 259 - 737
Target Start/End: Original strand, 51734633 - 51735105
Alignment:
Q  259 catgacattaatgctagcttactattggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcct 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51734633 catgacattaatgctagcttactattggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcct 51734732  T
Q  359 cgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggcatacatataaagcatgggcagcccccaccctac 458  Q
    |||||||||     ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51734733 cgaacacct-----gtgttgggtgtgaaagggtggatttagtccccattattgcctagagatatcgcatacatataaagcatgggcagcccccaccctac 51734827  T
Q  459 aagccgattttgtaaggatgagtcagttccaatataaaatttgagacttaccttttcaattttgtggctgttctatttattcttgttatcaaaacgatta 558  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51734828 aagccaattttgtaaggatgagtccgttccaatataaaatttgagacttaccttttcaattttgtggctgttctatttattcttgttatcaaaacgatta 51734927  T
Q  559 aatgaatctctttgtcgacttataatagttcgatgaatcaaaacctttggttgagatctctaaccannnnnnnnnactttaaaggggtgaagttaaaagg 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  51734928 aatgaatctctttgtcgacttataatagttcgatgaatcaaaacctttggttgagatctctaacca-ttttttttactttaaaggggtgaagttaaaagg 51735026  T
Q  659 aaaaagttacacaaaaattagttaattttgaagcccctaagtttctctttttatatggtttgagttttgaataaacttt 737  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51735027 aaaaagttacacaaaatttagttaattttgaagcccctaagtttctctttttatatgttttgagttttgaataaacttt 51735105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 51734377 - 51734573
Alignment:
Q  8 tttttgtctcttgttgatgtcatttttctgttacttgagtgttttagattgcatgtttcaggtatggtgttatgttggagcattttcaaaggcaagaccc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51734377 tttttgtctcttgttgatgtcatttttctgttacttgagtgttttagattgcatgtttcaggtatggtgttatgttggagcattttcaaaggcaagaccc 51734476  T
Q  108 gtctttgatggaaaagattaggggctgcattgtagattctgcacctgttgcaaaccctgacccacaggtaaaggctttagcaattttaagacttggt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51734477 gtctttgatggaaaagattaggggctgcattgtagattctgcacctgttgcaaaccctgacccacaggtaaaggctttagcaattttaagacttggt 51734573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 19811221 - 19811082
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    |||||||||  |||||||||| ||| | |||| |||||||||| ||||||||||| |||||||||||||  |||||| ||| ||||| ||||||||| ||    
T  19811221 ttggaaattcagtcttcattgtggtctgcccc-tagccgcctaattgtggcatttgggttgccttcattgcagcctccaactccttcgttgtgttgggtg 19811123  T
Q  383 tgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    ||||   ||||||||||||||   | |||||||||||||||||    
T  19811122 tgaagatgtggatttagtccc--acgttgcctagagatatggc 19811082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 51515636 - 51515727
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaa-gggtggatttagtcc 402  Q
    |||||||||||||| ||||||||||| | |||||||||||   ||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  51515636 cccctagccgcctaattgtggcatttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtcc 51515727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 7908028 - 7907935
Alignment:
Q  311 ccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaa-gggtggatttagtccc 403  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | ||||   ||  ||||||||||||| ||||||| ||||||||||||||||    
T  7908028 ccccctagccgcctaattgtggcatttgggttgccttcattgcatcctccggcagtttcattgtgttgggtgtgaaaggggtggatttagtccc 7907935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 34626956 - 34626867
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    ||||||||| |||| |||  |||| |||||||||||||||  |||||| |||||||||||| |||||| |||||| | ||||||||||||    
T  34626956 cccctagccacctaattgcagcatcttggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtggatttagtc 34626867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 14623129 - 14623196
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttgg 379  Q
    |||||||||||||| | ||||| ||| |||||||||||||  |||||| |||||||||||||||||||    
T  14623129 cccctagccgcctaatggtggcgtttgggttgccttcattgcagcctccaacaccttcattgtgttgg 14623196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 19810879 - 19810769
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||| ||||| ||| ||||||| ||||| |||||||  | |||||||||||||||||||||| | |||||| ||||| |  |||||||   |||||    
T  19810879 cccctagctgcctaattgcggcatttgggttggcttcattgcaacctcgaacaccttcattgtgttaggtgtgaaggggtgca-ctagtccc--acattg 19810783  T
Q  412 cctagagatatggc 425  Q
    ||||||||||||||    
T  19810782 cctagagatatggc 19810769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 33879931 - 33879869
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| ||||||||||||||||||| | ||| |||||||||||||||||    
T  33879931 ttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtccc 33879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 33964324 - 33964386
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| ||||||||||||||||||| | ||| |||||||||||||||||    
T  33964324 ttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtccc 33964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 40566421 - 40566337
Alignment:
Q  339 ggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    |||||||||||||| ||| || ||||||||||||||||||| |||||| || |||||| ||| ||||| ||||||||| ||||||||    
T  40566421 ggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggatggattcagt-cccat-attgcctagcgatatggc 40566337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 423
Target Start/End: Complemental strand, 5087968 - 5087831
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    |||| |||| || ||||||||||||  ||||| |||||| ||| |||||| |||| |||| ||||||||  | |||| ||||||||||||||| || ||     
T  5087968 ttggcaattctgccttcattgcggtccacccc-tagccgtctaattgtggtatttgggtttccttcattgcaacctccaacaccttcattgtgctgaata 5087870  T
Q  383 tgaaagggtggatttagtccccatcattgcctagagatatg 423  Q
    | || ||||||||| ||||||  ||||||| ||||||||||    
T  5087869 ttaaggggtggattcagtccc--tcattgcttagagatatg 5087831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 12581526 - 12581434
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaa-gggtggatttagtccc 403  Q
    ||||||||||||||  |  ||||||| |||||||||  ||  ||| || ||||||||||||||||||| ||||||| ||||||||||||||||    
T  12581526 cccctagccgcctaagtccggcatttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtccc 12581434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 18998633 - 18998742
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||| | | ||| || |||| ||||  |||||||  |||| | |||||||||  |||||||| |||||||||||||||||||||||   |||||    
T  18998633 cccctagccgtcaaattgcggaatttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaagggtggatttagtccc--acattg 18998730  T
Q  412 cctagagatatg 423  Q
    ||||||||||||    
T  18998731 cctagagatatg 18998742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 12410327 - 12410418
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||| ||||||||| ||||||| |||| ||||  ||  |||||| ||||||||||| ||||||| |||||| | || |||||||||||    
T  12410327 cccctagctgcctagttgcggcatttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtccc 12410418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 481
Target Start/End: Complemental strand, 41590663 - 41590547
Alignment:
Q  363 caccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggcatacatataaagcatgggcagcccccaccctacaagc 462  Q
    ||||||||||||||||| |||||  ||||| ||||||||||   ||||||||||||||||| | |   |||||||| |||||| ||| || | |||||||    
T  41590663 caccttcattgtgttgggtgtgagggggtgaatttagtccc--acattgcctagagatatgacctgtttataaagcttgggcaaccctcatcttacaagc 41590566  T
Q  463 cgattttgtaaggatgagt 481  Q
    || ||| |||||| |||||    
T  41590565 cggtttcgtaaggttgagt 41590547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 41590407 - 41590322
Alignment:
Q  314 cctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagt 400  Q
    |||||||||||| ||| || |||  |||||||||||||  |||||| |||||||||||||||| || |||||| |||||| ||||||    
T  41590407 cctagccgcctaattgcggaattg-ggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaaggggtgggtttagt 41590322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 51188947 - 51188885
Alignment:
Q  361 aacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    ||||||||||||||||||| | |||| ||||||||||||||||   |||||| ||||||||||||    
T  51188947 aacaccttcattgtgttgggtttgaaggggtggatttagtccc--acattgcttagagatatggc 51188885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 6868027 - 6868146
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    |||||||||  | |||||||||||| | |||| ||  |||||| |||  |||||| ||||||| ||| |  |||||| |||||||||||| |||||| |     
T  6868027 ttggaaattccgccttcattgcggtctgcccc-taatcgcctaattgcagcatttgggttgccctcactgcagcctccaacaccttcattttgttgggtt 6868125  T
Q  383 tgaaagggtggatttagtccc 403  Q
    |||| ||||||||||||||||    
T  6868126 tgaaggggtggatttagtccc 6868146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 31305664 - 31305724
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  31305664 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 31305724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 19810016 - 19809966
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagt 481  Q
    |||||||| |||||||||  |||| |||||||||||||||||||| |||||    
T  19810016 tataaagcttgggcagccttcaccttacaagccgattttgtaaggttgagt 19809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 45264614 - 45264676
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||| ||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  45264614 ttgccttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 45264676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 17419751 - 17419800
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  17419751 agcctcaaacaccttcattgtgttggctttgagggggtggatttagtccc 17419800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 33248512 - 33248423
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    |||||||| ||||| ||| ||||||  |||||| || |||  |  ||| ||||||||||||||||||| ||| || ||||||||||||||    
T  33248512 cccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtc 33248423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 33268684 - 33268595
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    |||||||| ||||| ||| ||||||  |||||| || |||  |  ||| ||||||||||||||||||| ||| || ||||||||||||||    
T  33268684 cccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtc 33268595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 504
Target Start/End: Original strand, 4796280 - 4796477
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    ||||||||||| || |||  |||||| |||||||||||||  |||||| ||||||||||||||||||| |||||| |||||||||||||| |   |||||    
T  4796280 cccctagccgcataattgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagtcac--acattg 4796377  T
Q  412 cctagagatatggca-------tacatataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaatttgaga 504  Q
    | |||||||||||||       |   ||||||||||||||||||| |||| ||||||| | |||||||||||||||| ||  |||||||||||| |||||    
T  4796378 cttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttacaagcgggttttgtaaggatgagttaggcccaatataaaatctgaga 4796477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 31973616 - 31973505
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||||||| ||| |||||||  |||||||| |||  |||||| ||||||||||||||||||| |||||||||||||||||||||||   |||||    
T  31973616 cccctagccgcctaattgaggcatttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaagggtggatttagtccc--acattg 31973519  T
Q  412 cctagagatatggc 425  Q
     |||||||||||||    
T  31973518 tctagagatatggc 31973505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 425
Target Start/End: Original strand, 16275164 - 16275274
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    ||||||||| |||  ||| ||||||| |||||||||||||  ||||||    |||||||||||||||||||| || ||||||||||||||||   |||||    
T  16275164 cccctagccacctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtccc--acattg 16275260  T
Q  412 cctagagatatggc 425  Q
    ||||||||||||||    
T  16275261 cctagagatatggc 16275274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 17016253 - 17016184
Alignment:
Q  335 ttttggtt-gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  17016253 ttttggttagccttcattatagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 17016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 31973335 - 31973216
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    ||||||||| || ||||||||| ||   ||||| ||||||||| ||| ||||||| |||| ||||||||  |  ||| ||||||||| ||||||||| |     
T  31973335 ttggaaattctgccttcattgcagtccgccccc-agccgcctaattgcggcatttgggtttccttcattgaaatctccaacaccttcgttgtgttgggtt 31973237  T
Q  383 tgaaagggtggatttagtccc 403  Q
    |||| ||||||||||||||||    
T  31973236 tgaaggggtggatttagtccc 31973216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 27760344 - 27760404
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  27760344 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 27760404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 904791 - 904744
Alignment:
Q  451 caccctacaagccgattttgtaaggatgagtcagttccaatataaaat 498  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||    
T  904791 caccttacaagccggttttgtaaggatgagtcaggcccaatataaaat 904744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 15844357 - 15844297
Alignment:
Q  361 aacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatg 423  Q
    ||||||||||||||||||  |||||| ||||||||||||||||   |||| ||||||||||||    
T  15844357 aacaccttcattgtgttgagtgtgaaggggtggatttagtccc--acatttcctagagatatg 15844297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 873849 - 873787
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  ||| || ||||||||||||||||||| | |||  ||||||||||||||||    
T  873849 ttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtccc 873787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 28010269 - 28010207
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||  ||||||||||||||||||| | |||  ||||||||||||||||    
T  28010269 ttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtccc 28010207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 37995787 - 37995725
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  ||| || ||||||||||||||||||| | |||  ||||||||||||||||    
T  37995787 ttgccttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtccc 37995725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 1028233 - 1028184
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  1028233 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 1028184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 13843661 - 13843710
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  13843661 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 13843710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 13843977 - 13844026
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  13843977 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 13844026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 20811418 - 20811467
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  20811418 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 20811467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 38887023 - 38887132
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||||||| ||| ||||||| |||||||||| ||  |||||| ||||||||||||||||||| |||||| |||| |||||| ||||   |||||    
T  38887023 cccctagccgcctaattgcggcatttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaaggggttgatttaatccc--acattg 38887120  T
Q  412 cctagagatatg 423  Q
    ||||||||||||    
T  38887121 cctagagatatg 38887132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 283 - 475
Target Start/End: Original strand, 30590342 - 30590538
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    ||||||||| || || ||||| |||| ||||| |||| |||||  ||| |||||| |||||||||||||  |||||| ||||||||||||||||| | ||    
T  30590342 ttggaaattctgcctccattgtggttcacccc-tagctgcctaactgtagcatttgggttgccttcattgcagcctccaacaccttcattgtgtttggtg 30590440  T
Q  383 tgaaagggtggatttagtccccatcattgcctagagatatggca-------tacatataaagcatgggcagcccccaccctacaagccgattttgtaagg 475  Q
    |||| ||||||||||||||||   |||||| |||| ||||||||       |   |||||||| |||||||||| |||| ||||||||| ||||||||||    
T  30590441 tgaaggggtggatttagtccc--acattgcatagatatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaagccggttttgtaagg 30590538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 28488514 - 28488423
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||| |||||||||||  ||||||||||||  |||||  ||||||||||||||||||| | |||| ||||||||||||||||    
T  28488514 cccctaaccgcctaattgtggcatttgagttgccttcattgcagccttaaacaccttcattgtgttgggtttgaaggggtggatttagtccc 28488423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 25971348 - 25971437
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    |||||||||||||| ||||| ||||||||| |||||||||  ||| || ||||||||||||||| ||| |||||| ||||||||| ||||    
T  25971348 cccctagccgcctaattgtgacattttggtagccttcattgcagcatccaacaccttcattgtgctgggtgtgaaggggtggattcagtc 25971437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 425
Target Start/End: Original strand, 39590621 - 39590730
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||||||| ||| ||||||| ||| |||||||||  || ||| ||||||||||||||||||| |||||| |||||||| ||||  ||| |||||    
T  39590621 cccctagccgcctaattgcggcatttgggt-gccttcattgcagtctccaacaccttcattgtgttgg-tgtgaaggggtggatatagt--ccagcattg 39590716  T
Q  412 cctagagatatggc 425  Q
    | ||||||||||||    
T  39590717 cttagagatatggc 39590730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 34529909 - 34530000
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||| |||||||| ||| ||||||| |||||||||||||  ||||||  | |||||||||||||||| ||| || ||| ||||||||||||    
T  34529909 cccctggccgcctaattgcggcatttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtccc 34530000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 23027667 - 23027596
Alignment:
Q  332 gcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| | |||||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  23027667 gcatttggcttgccttcattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtccc 23027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 44933236 - 44933174
Alignment:
Q  339 ggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    |||||||||||||  | |||| ||||||||||||||||||| | |||| ||||||||||||||    
T  44933236 ggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtc 44933174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 16213265 - 16213207
Alignment:
Q  365 ccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    |||||||||||||||||||||| |||||||||||||| |   || ||||||||||||||||    
T  16213265 ccttcattgtgttggatgtgaaggggtggatttagtctc--acactgcctagagatatggc 16213207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 20298667 - 20298607
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  20298667 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 20298607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 21085299 - 21085239
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  21085299 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 21085239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 23027981 - 23027919
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||  ||||||||||||||||||| | |||  ||||||||||||||||    
T  23027981 ttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtccc 23027919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 26642531 - 26642618
Alignment:
Q  334 attttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatg 423  Q
    |||| |||| ||||||||  || ||| ||||||||||||||||||  |||||  ||||||||||||| ||   |||||||||||||||||    
T  26642531 atttgggtttccttcattgcagtctcaaacaccttcattgtgttgagtgtgattgggtggatttagttcc--acattgcctagagatatg 26642618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 31766952 - 31767014
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| ||| ||||||||||||||| | |||  ||||||||||||||||    
T  31766952 ttgccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtccc 31767014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 1206074 - 1205935
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    ||||||||| || ||||||||||||   |||| |||||||||| ||| ||||||| |||||||||||||  |||||| | ||||||||| ||||| | ||    
T  1206074 ttggaaattctgccttcattgcggtccgcccc-tagccgcctaattgcggcatttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtg 1205976  T
Q  383 tgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    |||| |||||||||||||  |||||| ||| ||||||||||||    
T  1205975 tgaaggggtggatttagt--ccatcaatgcttagagatatggc 1205935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 9602169 - 9602076
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcccca 405  Q
    |||||||||||||| |||  |||||| | |||||||||||  ||| || ||||||||||||||||||| |||||| ||||||||||||||||||    
T  9602169 cccctagccgcctaattgcagcatttggattgccttcattccagcttccaacaccttcattgtgttgggtgtgaaggggtggatttagtcccca 9602076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 1205732 - 1205641
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||||| ||||||||||| |||| ||||||||  |||||  ||||| ||||||||||||| |||||| ||||||||| ||||||    
T  1205732 cccctagccgcctaattgtggcatttgggtttccttcattgcagcctacaacactttcattgtgttgggtgtgaaggggtggattcagtccc 1205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 130823 - 130761
Alignment:
Q  339 ggttgccttcattatagcctcgaaca-ccttcattgtgttggatgtgaaagggtggatttagt 400  Q
    |||||||||||||  |||||| |||| ||||||||||||||| |||||| |||||||||||||    
T  130823 ggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 32215859 - 32215921
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| |||||||||||| |||||| | ||| |||||||||||||||||    
T  32215859 ttgccttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagtccc 32215921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 10418489 - 10418429
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  10418489 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 10418429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 24055260 - 24055200
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  24055260 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 24055200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 32055 - 31965
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    ||||||| | |||| ||| |||||||  ||||||||||||  || ||| |||||||||||| |||||| | |||  |||||||||||||||    
T  32055 cccctagtcacctaattgcggcatttaagttgccttcattgcagtctccaacaccttcattttgttggctttgagggggtggatttagtcc 31965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 22889721 - 22889683
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttgg 379  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  22889721 ttgccttcattacagcctctaacaccttcattgtgttgg 22889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 22911327 - 22911289
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttgg 379  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  22911327 ttgccttcattacagcctctaacaccttcattgtgttgg 22911289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 1408975 - 1409024
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  1408975 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 1409024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 19712445 - 19712412
Alignment:
Q  448 ccccaccctacaagccgattttgtaaggatgagt 481  Q
    ||||||| ||||||||||||||||||||||||||    
T  19712445 ccccaccttacaagccgattttgtaaggatgagt 19712412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 427
Target Start/End: Original strand, 48046261 - 48046392
Alignment:
Q  293 tgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaa-gggt 391  Q
    |||||||||||||||   ||| ||||||||||| |||| |||||  |||||||||||||  | |||| |||||||||| | |||||| ||||||| ||||    
T  48046261 tgtcttcattgcggtc--ccctctagccgcctaattgtagcattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggt 48046358  T
Q  392 ggatttagtccccatcattgcctagagatatggcat 427  Q
    ||||||||||||   |||||||||||||||||||||    
T  48046359 ggatttagtccc--acattgcctagagatatggcat 48046392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 30491133 - 30491023
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||||||| |||  |||  | |||||||||||||  |||||| |||||||||| |||||||| |||||| |||||||||||||||    |||||    
T  30491133 cccctagccgcctaattgcagcacctgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagtcc---acattg 30491037  T
Q  412 cctagagatatggc 425  Q
    |||||| |||||||    
T  30491036 cctagatatatggc 30491023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 26942769 - 26942679
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    ||||||||| |||| ||| || |||| ||||| |||||||  | |||| ||||| ||||||||||||| |||||| |||||||||||||||    
T  26942769 cccctagccacctaattgcggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtcc 26942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 46332752 - 46332624
Alignment:
Q  275 gcttactattggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgt 374  Q
    ||||||| |||||||||  | ||||||||||||   ||||  ||||||||| ||| ||||||| |||||||||||||  |||||  ||||| |||||||     
T  46332752 gcttacttttggaaatttcgccttcattgcggtccgcccctaagccgcctaattgcggcatttgggttgccttcattgcagccttcaacacgttcattgg 46332653  T
Q  375 gttggatgtgaaagggtggatttagtccc 403  Q
     |||| | | || ||||||||||||||||    
T  46332652 attgggttttaaggggtggatttagtccc 46332624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 3137108 - 3137021
Alignment:
Q  330 tggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagaga 419  Q
    |||||||| ||||||||||||| ||||||| |||| | |||||||| ||| |  ||| ||||||||||||||||   |||||||||||||    
T  3137108 tggcatttaggttgccttcattgtagcctccaacatcctcattgtgctgggttcgaatgggtggatttagtccc--acattgcctagaga 3137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 53738361 - 53738299
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  53738361 ttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 53738299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 54595242 - 54595152
Alignment:
Q  313 ccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||| ||||| ||| |||||||  ||||||||||||  | |||| |||||||||||||||  || |||||| |||||||| |||||||    
T  54595242 ccctagctgcctaattgcggcatttaagttgccttcattgcaacctccaacaccttcattgtgcggggtgtgaaggggtggatatagtccc 54595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 54595558 - 54595468
Alignment:
Q  313 ccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||||  ||| ||||||  ||||| ||||||| |||| | ||||||||||||||||||| |||||| || |||| ||| ||||    
T  54595558 ccctagccgcctaagtgttgcatttgtgttgctttcattacagccaccaacaccttcattgtgttggttgtgaagggatggaattaatccc 54595468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 15665106 - 15665166
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  15665106 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 15665166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 45427403 - 45427343
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  45427403 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 45427343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 3137787 - 3137726
Alignment:
Q  340 gttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    ||||||||||||  |||||  ||||||||||||||||||| ||||||  ||||||||||||||    
T  3137787 gttgccttcattgcagcctgcaacaccttcattgtgttgg-tgtgaattggtggatttagtcc 3137726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 26942554 - 26942464
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    |||||||||||||| ||  || |||| ||||| |||||||  | |||| ||||| ||||||||||||| | |||| |||||||||| ||||    
T  26942554 cccctagccgcctaattagggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtatgaaggggtggattttgtcc 26942464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 26942930 - 26942880
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagt 481  Q
    |||||||| | |||| ||| |||| ||||||||||||||||||||||||||    
T  26942930 tataaagcttaggcacccctcaccttacaagccgattttgtaaggatgagt 26942880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 43972306 - 43972368
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||  |||||| ||||||||||||||||||| | |||  ||||| ||||||||||    
T  43972306 ttgccttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtccc 43972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 991168 - 991217
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  991168 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 991217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 50857976 - 50858025
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  50857976 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 50858025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 50858292 - 50858341
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  50858292 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 50858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 52043232 - 52043171
Alignment:
Q  340 gttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    |||| |||||||  |||||| |||||||||||||| | || |||||| ||||||||||||||    
T  52043232 gttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtc 52043171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 53740146 - 53740195
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  53740146 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 53740195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 56509560 - 56509621
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    |||||||||||  ||| || ||||||||||||||||||| | |||  |||||||||||||||    
T  56509560 ttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcc 56509621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 30610968 - 30610877
Alignment:
Q  332 gcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    |||||| |||||||||||||  |||||| ||||||||||||||||||| || ||| ||||||||||| || |   |||||||||||||||||||    
T  30610968 gcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctc--acattgcctagagatatggc 30610877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 39079811 - 39079698
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||||  ||| ||| |||||||  |||| |||||| | |||||| ||||||||||||||||||| |||||| ||||||||||||     |||| ||    
T  39079811 cccctagccatctaattgcggcatttgagttgtcttcatcacagcctccaacaccttcattgtgttgggtgtgaaggggtggatttag--ataatcaatg 39079714  T
Q  412 cctagagatatggcat 427  Q
    ||||||||||||||||    
T  39079713 cctagagatatggcat 39079698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 425
Target Start/End: Complemental strand, 422857 - 422732
Alignment:
Q  296 cttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggat 395  Q
    |||||||||||||  | ||||||| ||||| | | ||||||| |||||||| ||||  ||| || ||||||||||||||||||| |||||| |||||  |    
T  422857 cttcattgcggtt--cgccctagcagcctaatcgcggcatttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgact 422760  T
Q  396 ttagtccccatcattgcctagagatatggc 425  Q
    ||| ||||   |||||||||||||||||||    
T  422759 ttaatccc--acattgcctagagatatggc 422732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 10406644 - 10406577
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaat 498  Q
    ||||||||||||||||||| |||| ||||||| | |||||||||||||||| ||  ||||||||||||    
T  10406644 tataaagcatgggcagccctcaccgtacaagctggttttgtaaggatgagttaggcccaatataaaat 10406577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 23721065 - 23721156
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||||| |||| ||| ||||||| |||||||||||||  |||||| |||| | |||||||||||||  |||| |||||| |||||||||    
T  23721065 cccctagccacctaattgcggcatttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaaggggtgggtttagtccc 23721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 41387459 - 41387543
Alignment:
Q  319 ccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||| ||||| ||||| |||||||||||||  | |||| ||||||||||||||||| | | |||| |||||| |||||||||    
T  41387459 ccgcctaattgtgacatttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtccc 41387543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 41709940 - 41710031
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||| |||||| |||  |||||| ||||| |||||||  | |||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  41709940 cccctagtcgcctaattgcagcatttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtccc 41710031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 12840754 - 12840643
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    ||||||||| |||| ||| ||||||| |||||  ||||||  |  ||| ||||||||| ||||||||| | ||||||||||| |||||| ||   |||||    
T  12840754 cccctagcctcctaattgcggcatttgggttgttttcattgcattctccaacaccttcgttgtgttgggtttgaaagggtggctttagttcc--acattg 12840657  T
Q  412 cctagagatatggc 425  Q
    ||||||||||||||    
T  12840656 cctagagatatggc 12840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 32000863 - 32000913
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagt 481  Q
    |||||||| |||||||||| |||| ||||||||| ||||||||||||||||    
T  32000863 tataaagcttgggcagccctcaccttacaagccggttttgtaaggatgagt 32000913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 28359024 - 28359114
Alignment:
Q  331 ggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaa-gggtggatttagtccccatcattgcctagagatat 422  Q
    ||||||| |||| ||||||||  |||||| |||||||||||| | |||| ||||||| ||||||||| ||||||   ||||||||||||||||    
T  28359024 ggcatttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaatgggtggattcagtccc--acattgcctagagatat 28359114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 257418 - 257358
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  257418 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 257358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 43168044 - 43167984
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  43168044 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 43167984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 14092314 - 14092254
Alignment:
Q  363 caccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    ||||||||||||| |||||||||  |||||| |||||||||   |||||||||||||||||||    
T  14092314 caccttcattgtgctggatgtgagggggtgggtttagtccc--acattgcctagagatatggc 14092254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 14402332 - 14402272
Alignment:
Q  363 caccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    ||||||||||||| |||||||||  |||||| |||||||||   |||||||||||||||||||    
T  14402332 caccttcattgtgctggatgtgagggggtgggtttagtccc--acattgcctagagatatggc 14402272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 41710064 - 41710131
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaat 498  Q
    ||||||||||||||| ||| | || |||||| ||||||||||||||||||| ||  ||||||| ||||    
T  41710064 tataaagcatgggcatccctcgccttacaagtcgattttgtaaggatgagttaggcccaatatgaaat 41710131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 46753069 - 46753157
Alignment:
Q  332 gcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatat 422  Q
    |||||| ||||||||||||   |||||| ||||  ||| ||||||||| |||||| |||| ||||||||  ||| ||||||||||||||||    
T  46753069 gcatttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagt--ccaacattgcctagagatat 46753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 397
Target Start/End: Original strand, 3973054 - 3973167
Alignment:
Q  283 ttggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatg 382  Q
    |||||||||  | ||||||||||||  ||||| |||||||||| |||   ||||| |||||||||||||  |||||  ||||||||||| ||||||| |     
T  3973054 ttggaaattccgccttcattgcggtccacccc-tagccgcctaattgcaacatttgggttgccttcattgcagccttcaacaccttcatcgtgttgggtt 3973152  T
Q  383 tgaaagggtggattt 397  Q
    |||  ||||||||||    
T  3973153 tgagggggtggattt 3973167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 12305107 - 12305041
Alignment:
Q  431 tataaagcatgggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaa 497  Q
    ||||||| ||||||||||| |||  ||||||||| || ||||||||||||| ||  |||||||||||    
T  12305107 tataaagtatgggcagccctcactttacaagccggttctgtaaggatgagttaggcccaatataaaa 12305041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 16015537 - 16015478
Alignment:
Q  366 cttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggcat 427  Q
    |||||||||||||  |||||| ||||||||||||||||   | |||||||||||||||||||    
T  16015537 cttcattgtgttgactgtgaaggggtggatttagtccc--acgttgcctagagatatggcat 16015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 28909983 - 28910045
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||| ||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  28909983 ttgctttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 28910045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 41389277 - 41389319
Alignment:
Q  361 aacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||||||||||||| | |||||| ||||||||||||||||    
T  41389277 aacaccttcattgtgttaggtgtgaaggggtggatttagtccc 41389319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 14596009 - 14595950
Alignment:
Q  366 cttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagagatatggcat 427  Q
    |||||||||||||  |||||| |||||||||||| ||||| | |||||||||||||||||||    
T  14596009 cttcattgtgttgactgtgaaggggtggatttag-cccca-cgttgcctagagatatggcat 14595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 39080116 - 39080014
Alignment:
Q  319 ccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagag 418  Q
    ||||||| ||| ||||||| |||||||||| ||  |||||| |||||| ||||||| | || |||| | ||||||||||| || |   ||||||||||||    
T  39080116 ccgcctaattgcggcatttgggttgccttcgttccagcctccaacaccctcattgtatcgggtgtggaggggtggatttaatctc--acattgcctagag 39080019  T
Q  419 atatg 423  Q
    |||||    
T  39080018 atatg 39080014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 428
Target Start/End: Original strand, 51917802 - 51917916
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattg 411  Q
    |||||||| ||||| |||  |||||| |||||||||||||  | |||  ||| |||||||| |||||  ||||||||||||||||||||  ||  |||||    
T  51917802 cccctagctgcctaattgaagcatttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagt--cctacattg 51917899  T
Q  412 cctagagatatggcata 428  Q
    |||||||||||||||||    
T  51917900 cctagagatatggcata 51917916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 662648 - 662739
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||| |||||| ||| | ||||| |||||||||||||  |||||| |||||||| |||||||||| | |||| |||| |||||||||||    
T  662648 cccctagtcgcctaattgcgccatttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaaggggtcgatttagtccc 662739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 425
Target Start/End: Complemental strand, 39225208 - 39225096
Alignment:
Q  315 ctagccgcctagttgtggcattttggttgccttcattatagcctcga----acaccttcattgtgttggatgtgaaagggtggatttagtccccatcatt 410  Q
    ||||||||||| ||| ||||||| ||||||||||| |  |||||| |    |||||||||||||||||| |||||| | |||| |||||||||   ||||    
T  39225208 ctagccgcctaattgcggcatttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtccc--gcatt 39225111  T
Q  411 gcctagagatatggc 425  Q
    |||||||||||||||    
T  39225110 gcctagagatatggc 39225096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 54861447 - 54861536
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtc 401  Q
    ||||||||||||||  || |||||   ||||| |||||||  |||||| ||||||||| ||||||||| |||||| ||||||||||||||    
T  54861447 cccctagccgcctaactgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 54861536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 4255463 - 4255523
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||||| ||||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  4255463 gccttcattgtagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 4255523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 407
Target Start/End: Complemental strand, 24860213 - 24860147
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatc 407  Q
    |||||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||| ||||    
T  24860213 ttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccacatc 24860147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 34250532 - 34250443
Alignment:
Q  314 cctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||||| ||| | ||||| |||||||||||||  |||||| |||||||| |||||||| | | |||| ||||| |||| |||||    
T  34250532 cctagccgcctaattgcgacatttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaaggggtgaatttcgtccc 34250443  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 13769442 - 13769382
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  13769442 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 13769382  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 14170182 - 14170090
Alignment:
Q  312 cccctagccgcctag-ttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||||||||||  ||| ||||||| | |||||||||||  |||||| | ||||||||||||||||| | |||  || |||||||||||||    
T  14170182 cccctagccgcctaaattgcggcatttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgaggggctggatttagtccc 14170090  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 41380677 - 41380737
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  41380677 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 41380737  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 43101522 - 43101462
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  43101522 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 43101462  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 45443233 - 45443293
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  45443233 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 45443293  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 54368992 - 54369052
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  54368992 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 54369052  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 40337923 - 40337868
Alignment:
Q  442 ggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaa 497  Q
    |||| ||| |||| |||||||||||||||||||||||||| ||  |||||||||||    
T  40337923 ggcatccctcaccttacaagccgattttgtaaggatgagttaggcccaatataaaa 40337868  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 44573290 - 44573339
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  44573290 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 44573339  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 311 - 422
Target Start/End: Complemental strand, 5511984 - 5511875
Alignment:
Q  311 ccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcatt 410  Q
    ||||||||| ||| | ||| ||||||  |||||||||||||||||| || ||| ||||||||||||||  |||||| ||||| |||||||  |||  |||    
T  5511984 ccccctagctgccaaattgcggcattagggttgccttcattatagcttccaacgccttcattgtgttgtgtgtgaaggggtgtatttagt--ccaatatt 5511887  T
Q  411 gcctagagatat 422  Q
    ||||||||||||    
T  5511886 gcctagagatat 5511875  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 18183392 - 18183478
Alignment:
Q  316 tagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtcc 402  Q
    ||||||||||  || |||||||  ||||||||||||  |||||| ||||||||||||||||||| |||||  || ||||||||||||    
T  18183392 tagccgcctaagtgcggcatttgagttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatgggatggatttagtcc 18183478  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 425
Target Start/End: Complemental strand, 26761038 - 26760897
Alignment:
Q  281 tattggaaattgtgtcttcattgcggtttaccccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttgga 380  Q
    ||||||||||| || |||||||||||| | |||| |||||||||| | ||||||||| ||||||||| ||   ||| |  |||||||| |||||||||      
T  26761038 tattggaaattctgccttcattgcggtctgcccc-tagccgcctaatcgtggcatttgggttgccttgatggcagcattcaacacctttattgtgttgag 26760940  T
Q  381 tgtgaaagggtggatttagtccccatcattgcctagagatatggc 425  Q
    | |||| |||||| |||||||||   |||||| ||||||||||||    
T  26760939 tttgaaggggtgggtttagtccc--acattgcttagagatatggc 26760897  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 9889368 - 9889311
Alignment:
Q  440 tgggcagcccccaccctacaagccgattttgtaaggatgagtcagttccaatataaaa 497  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||  |||||||||||    
T  9889368 tgggcagccctcaccatacaagccggttttgtaaggatgagttaggcccaatataaaa 9889311  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 11339836 - 11339787
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||| | || ||||||||||||||||||||    
T  11339836 agcctccaacaccttcattgtgttaggtgcgaaagggtggatttagtccc 11339787  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 18902015 - 18901955
Alignment:
Q  343 gccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||||||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  18902015 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 18901955  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 21373907 - 21373983
Alignment:
Q  314 cctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaaggg 390  Q
    |||||| ||||| ||| |||||||  ||||||||||||  |||||| |||||| | |||||||||| ||||||||||    
T  21373907 cctagctgcctacttgcggcatttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtgaaaggg 21373983  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 15820254 - 15820192
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    ||||||| |||  |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  15820254 ttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 15820192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 3976611 - 3976562
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  3976611 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 3976562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 3977143 - 3977094
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  3977143 agcctctaacaccttcattgtgttggctctgagggggtggatttagtccc 3977094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 9889508 - 9889423
Alignment:
Q  312 cccctagccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggattt 397  Q
    ||||||||  |||| ||||||||||| |||||||||||||  | ||||  ||| ||||||||| |||| |||||| || |||||||    
T  9889508 cccctagcttcctaattgtggcatttgggttgccttcattgcaacctccgacatcttcattgtattgggtgtgaagggatggattt 9889423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 39583429 - 39583535
Alignment:
Q  319 ccgcctagttgtggcattttggttgccttcattatagcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccccatcattgcctagag 418  Q
    ||||||| ||| ||||||| |||||||||||||  || ||| ||||| | |||||||||   ||||||  |||||||||||||||  |  ||||||||||    
T  39583429 ccgcctaattgcggcatttgggttgccttcattgcagtctccaacacttccattgtgttcagtgtgaagaggtggatttagtccc--ttgttgcctagag 39583526  T
Q  419 atatggcat 427  Q
    | |||||||    
T  39583527 aaatggcat 39583535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 43169206 - 43169255
Alignment:
Q  354 agcctcgaacaccttcattgtgttggatgtgaaagggtggatttagtccc 403  Q
    |||||| ||||||||||||||||||| | |||  ||||||||||||||||    
T  43169206 agcctccaacaccttcattgtgttggctttgagggggtggatttagtccc 43169255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 11180 - 11142
Alignment:
Q  341 ttgccttcattatagcctcgaacaccttcattgtgttgg 379  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  11180 ttgccttcattacagcctctaacaccttcattgtgttgg 11142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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