View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-12 (Length: 751)
Name: NF0219-INSERTION-12
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 419 - 751
Target Start/End: Original strand, 16259164 - 16259496
Alignment:
| Q |
419 |
ggaccgtttgatccaacaaccacatattgtcgacaattttgatcccattagacctaactaattttcgtttcattgtttattttttcttgccctaatttgt |
518 |
Q |
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| T |
16259164 |
ggaccgtttgatccaacaaccacatattgtcgacaattttgatcccattagacctaactaattttcgtttcattgtttattttttcttgccctaatttgt |
16259263 |
T |
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| Q |
519 |
gtgggagcacagtgcaatcaatcctagtagaagcatgctcaagaattgtgggtaactgtggagcaatggattgcctcaaatattgtaataaccttccagg |
618 |
Q |
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| T |
16259264 |
gtgggagcacagtgcaatcaatcctagtagaagcatgctcaagaattgtgggtaactgtggagcaatggattgcctcaaatattgtaataaccttccagg |
16259363 |
T |
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| Q |
619 |
aagtccaaccggatcatgtcgttacttcaacctatgcacttgtttttacaatacgccacccccaaaaactcgaggaatacgaacttgcagtgttggattt |
718 |
Q |
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| T |
16259364 |
aagtccaaccggatcatgtcgttacttcaacttatgcacttgtttttacaatacgccacccccaaaaactcgaggaatacgaacttgcagtgttggattt |
16259463 |
T |
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| Q |
719 |
ggcctttgtgaaaattgtgatctaaactgttgc |
751 |
Q |
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| T |
16259464 |
ggcctttgcgaaaattgtgatctaaactgttgc |
16259496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 16258753 - 16259094
Alignment:
| Q |
7 |
agatataacctcaaatgtataaatgtcgagcttttgattgatttgtaacaacaaaaacattttggagtaacaaaaccaaagaaacttgacgaagaaatat |
106 |
Q |
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| T |
16258753 |
agatataacctcaaatgtataaatgtcgagcttttgattgatttgtaacaacaaaaacattttggagtaacaaaaccaaagaaacttgacgaagaaatat |
16258852 |
T |
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| Q |
107 |
tgtctaatggcgaagatctcaaattctctatgcatctttatcgtccttgtttccaccttcacaagtaagtttctccatcatcttgatactacnnnnnnnn |
206 |
Q |
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| T |
16258853 |
tgtctaatggcgaagatctcaaattctctatgcatctttatcgtccttgtttccaccttcacaagtaagtttctccatcatcttgatactactttttctt |
16258952 |
T |
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| Q |
207 |
nnnnnnnnacaatctcgatatgcaagagtttataaaaatttacaacacttgcacacactttgcgttaaccacatgctctatatcaaattcagatttttcc |
306 |
Q |
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| T |
16258953 |
tttattttacaatctcgatatgcaagagtttataaaaatttacaacacttgcacacactttgcgttaaccacatgctctatatcaaattcaga-ttttcc |
16259051 |
T |
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| Q |
307 |
catagtattgtttgacgaattcacgtattcagtatattcaaga |
349 |
Q |
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| T |
16259052 |
catagtattgtttgacgaattcacgtattcagtatattcaaga |
16259094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 16266826 - 16266879
Alignment:
| Q |
68 |
ttggagtaacaaaaccaaagaaacttgacgaagaaatattgtctaatggcgaag |
121 |
Q |
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| T |
16266826 |
ttggagtaacaaatccaaagaaatttgacaaagaaatattgtctaatggcgaag |
16266879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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