View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-14 (Length: 431)
Name: NF0219-INSERTION-14
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-14 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 33199964 - 33200345
Alignment:
| Q |
8 |
acatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttga-gctcactaatgttatggatccatgttggcatcagtgtctcaatcaag |
106 |
Q |
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| T |
33199964 |
acatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttgaagctcactaatgttatggatccatgttggcatcagtgtctcaatcaag |
33200063 |
T |
|
| Q |
107 |
taataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcgtgtggggacgtggggtgttacttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33200064 |
taataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcatgtggggacgtggggtgttacttt |
33200163 |
T |
|
| Q |
207 |
tcaatttcttcatattaatgtgataagggtcgttattgtttgctaccatgcacatttatatttaactaacaatcgtcaagaccataacatgatatcatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33200164 |
tcaatttcttcatattaatgtgataagggtcgttattgtttgttaccatgcacatttatatttaactaacaatcgtcaagaccataacatgatattatta |
33200263 |
T |
|
| Q |
307 |
tcatttctacgtgttaaagtcccatcttgcttaaaagagataatcagtagatgagtttttcgctataaataaagactttcta |
388 |
Q |
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| T |
33200264 |
tcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtggatgagtttttcgctataaataaagactttcta |
33200345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 33200377 - 33200421
Alignment:
| Q |
387 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
431 |
Q |
| |
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|
| T |
33200377 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
33200421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 44770893 - 44770856
Alignment:
| Q |
209 |
aatttcttcatattaatgtgataagggtcgttattgtt |
246 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
44770893 |
aatttcttcatattaatgtgataagtgtcgttattgtt |
44770856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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