View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-15 (Length: 250)
Name: NF0219-INSERTION-15
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 10378801 - 10378559
Alignment:
| Q |
8 |
tatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgcca |
107 |
Q |
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| T |
10378801 |
tatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgcca |
10378702 |
T |
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| Q |
108 |
ttcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgt |
207 |
Q |
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| T |
10378701 |
ttcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgt |
10378602 |
T |
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| Q |
208 |
ggcataagtgtacgcatggaggcatttccatcctttcatctca |
250 |
Q |
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| T |
10378601 |
ggcataagtgtacgcatggaggcatttccatcctttcatctca |
10378559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 31329410 - 31329213
Alignment:
| Q |
7 |
atatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatcagtttttgag---tctgagttatttggctttgtgttggttctggaattt |
103 |
Q |
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| T |
31329410 |
atatcgaggat-ttttttgggttgtttttcttgcaacttgggtcaaaattcggtttttgagaggtct-agttatttggatttgtgttggctctggaattt |
31329313 |
T |
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| Q |
104 |
gccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaa |
203 |
Q |
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| T |
31329312 |
tccattaagtaccattggcggcatcttagggtggag-gggactcctggagtgctttgcaggctttcgggaacccttcgttagttccattttctcttcgaa |
31329214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 31336131 - 31335934
Alignment:
| Q |
7 |
atatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatcagtttttgag---tctgagttatttggctttgtgttggttctggaattt |
103 |
Q |
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| T |
31336131 |
atatcgaggat-ttttttgggttgtttttcttgcaacttgggtcaaaattcggtttttgagaggtct-agttatttggatttgtgttggctctggaattt |
31336034 |
T |
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| Q |
104 |
gccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaa |
203 |
Q |
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| T |
31336033 |
tccattaagtaccattggcggcatcttagggtggag-gggactcctggagtgctttgcaggctttcgggaacccttcgttagttccattttctcttcgaa |
31335935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 31326664 - 31326624
Alignment:
| Q |
210 |
cataagtgtacgcatggaggcatttccatcctttcatctca |
250 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |
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| T |
31326664 |
cataattgtacgcatggaggcatttccatcatttcatctca |
31326624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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