View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219-INSERTION-2 (Length: 749)

Name: NF0219-INSERTION-2
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219-INSERTION-2
NF0219-INSERTION-2
[»] chr3 (1 HSPs)
chr3 (7-749)||(52379147-52379898)


Alignment Details
Target: chr3 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 7 - 749
Target Start/End: Complemental strand, 52379898 - 52379147
Alignment:
Q  7 aagacattgagctagttcaagtcaccatcttttctcataataaacaaacaacaactctcttactattttgtgttttctacttcaaacacaattgtttccc 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52379898 aagacattgagctagttcaagtcaccatattttctcataataaacaaacaacaactctcttactgttttgtgttttctacttcaaacacaattgtttccc 52379799  T
Q  107 ttcttcttttgtttttgagtttatatattgagacaaattagcagcatgggttggacaagagaagagaacagacgttttgaggatgcacttgcagtatatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379798 ttcttcttttgtttttgagtttatatattgagacaaattagcagcatgggttggacaagagaagagaacagacgttttgaggatgcacttgcagtatatg 52379699  T
Q  207 gtccaraagatccaaatcggtggcaacatgtagctaatgctgttggtggaaaatccatacaagaggtgaaaatgcattacgagatcctcaaggaagatct 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379698 gtccagaagatccaaatcggtggcaacatgtagctaatgctgttggtggaaaatccatacaagaggtgaaaatgcattacgagatcctcaaggaagatct 52379599  T
Q  307 catacgaattgagcatgatcaaatcccactgccaacatacaggggaggtgctggtatcaatatcaccaatggaaggcaatttggcaatgagcaaaggtaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379598 catacgaattgagcatgatcaaatcccactgccaacatacaggggaggtgctggtatcaatatcaccaatggaaggcaatttggcaatgagcaaaggtaa 52379499  T
Q  407 ttatgcaatcaatttcattctaaagccatcatcttaaaaaatccatgcagtgcataatgttggttaagttttcatgacaagtgctaatattttgtagttg 506  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379498 ttatgcaatcaatttcattgtaaagctatcatctta-aaaatccatgcagtacataatgttggttaagttttcatgacaagtgctaatattttgtagttg 52379400  T
Q  507 ctacaacatatatgatgaatttagttcttcttttcttatcagttttattacattttaaattaaaccaagaaaatttaatattacttatcaga-------- 598  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  52379399 ctacaacatat---atgaatttagttcttcttttcttatcagttttattacattttaaattaaaccaagaaaatttaatattacttatcagataagaaga 52379303  T
Q  599 -----ttcattgcaagtataaaggccccttataggtgctttcaaaagaataatagaataccttctatttttggagagtcgtgtacattgtcaagtttatc 693  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379302 tggttttcattgcaagtataaaggccccttataggtgctttcaaaagaataatagaataccttctatttttggagagtcgtgtacattgtcaagtttatc 52379203  T
Q  694 atgctactcttgacctttccatttctttcatccatttataagaatttaactaaatg 749  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52379202 atgctactcttgacctttccatttctttcatccatttataagattttaactaaatg 52379147  T

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