View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219-INSERTION-4 (Length: 693)

Name: NF0219-INSERTION-4
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219-INSERTION-4
NF0219-INSERTION-4
[»] chr7 (3 HSPs)
chr7 (8-693)||(39446766-39447467)
chr7 (321-460)||(38698668-38698807)
chr7 (66-100)||(38699308-38699342)


Alignment Details
Target: chr7 (Bit Score: 629; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Original strand, 39446766 - 39447467
Alignment:
Q  8 ctttttatggaatatgaaaggtattctagattttcaaagtaaatattaaaaatggttgactagcttatcatttcattggatttgtatgataacatgttct 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39446766 ctttttatggaatatgaaaggtattctagattttcaacgtaaatattaaaaatggttgactagcttatcatttcattggatttgtatgataacatgttct 39446865  T
Q  108 tctattcacccttcatccacatgtaaataatatatcgaccattccgcatcgtgcaatcctttaagaacaataacatatagagcaacaatgttgaatttga 207  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39446866 tctaatcacccttcattcacatgtaaataatatatcgaccattccgcatcgtgcaatcctttaagaacaataacatatagagcaacaatgttgaatttga 39446965  T
Q  208 tattaggaagaaaagaactaagtagtagtaaagcagcatgttttttgttatttgccaacaccttagataagtcaaagttatgtttagtgagatttttatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39446966 tattaggaagaaaagaactaagtagtagtaaagcagcatgttttttgttatttgccaccaccttagataagtcaaagttatgtttagtgagatttttatt 39447065  T
Q  308 gttgtttaattattctagaattttgtatctgaagtttcaatgttgtttagggaattcatccccgaaatgaaggaagctattgctagtttatgctatattg 407  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39447066 gttgtttaattattctggaattttgtatctgaagtttcaatgttgtttagggaattcatccccgaaatgaaggaagctattgctagtttatgctatattg 39447165  T
Q  408 gagcaaagtttagtgaacttccagacttgcagaagcttcggtcacaattttctaaaaaatatggggaaaaattcatagctagtttggcagaatgtggtgc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39447166 gagcaaagtttagtgaacttccagacttgcagaagcttcggtcacaattttctaaaaaatatggggaaaaattcatagctagtttggcagaatgtggtgc 39447265  T
Q  508 taacaaagaggtacagtgaatgtgaatg----------------aaggttttgtttttgtggataaaacatcttatgcagtttcaattgcaggtgataaa 591  Q
    ||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39447266 taacaaagaggtacagtgaatgtgaatgattttatatgctctttaaggttttgtttttgtggataaaacatcttatgcagtttcaattgcaggtgataaa 39447365  T
Q  592 cttgtgcatggttccggaaccacttgttgaggaaagaaacaaacttcttaaagaaattgctactcaattccacatacaatggaatcctcccatggcatta 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39447366 cttgtgcatggttccggaaccacttgttgaggaaagaaacaaacttcttaaagaaattgctactcaattccacatacaatggaatcctcccatggcatta 39447465  T
Q  692 aa 693  Q
    ||    
T  39447466 aa 39447467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 321 - 460
Target Start/End: Complemental strand, 38698807 - 38698668
Alignment:
Q  321 tctagaattttgtatctgaagtttcaatgttgtttagggaattcatccccgaaatgaaggaagctattgctagtttatgctatattggagcaaagtttag 420  Q
    |||||||||| |||||| |||| ||||||||||| ||| || |  |||| ||| |||||||| |||| ||||||||||| ||| ||| | ||| || ||     
T  38698807 tctagaatttggtatctaaagtctcaatgttgttcaggaaagttctcccagaagtgaaggaacctatagctagtttatgttatgttgaatcaaggtataa 38698708  T
Q  421 tgaacttccagacttgcagaagcttcggtcacaattttct 460  Q
     ||||||||||  ||| ||||||||  |||||||||||||    
T  38698707 ggaacttccagttttgaagaagcttatgtcacaattttct 38698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 38699342 - 38699308
Alignment:
Q  66 actagcttatcatttcattggatttgtatgataac 100  Q
    |||||||||||||||||||||||||||||||||||    
T  38699342 actagcttatcatttcattggatttgtatgataac 38699308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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