View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219-INSERTION-5 (Length: 659)

Name: NF0219-INSERTION-5
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219-INSERTION-5
NF0219-INSERTION-5
[»] chr1 (1 HSPs)
chr1 (7-654)||(39836997-39837628)


Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 654
Target Start/End: Complemental strand, 39837628 - 39836997
Alignment:
Q  7 agtaccgaccataatctatttaacttgtgacaaccacatatatttccacacgtttaaacctgtgttctgagcatactattaatagttcagaagtgggaat 106  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39837628 agtaccgaccataatctaattaagttgtgacaaccacatatatttccacacgtttaaacctgtgttctgagcatactataaatagttcagaagtgggaat 39837529  T
Q  107 atagtatatatttagcatctggaaaaatgctaagctaatgtaagtcataatctattaatagttcaggacttatttaaacgttaatctggaaattaaggca 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39837528 atagtatatatttagcatctggaaaaatgttaagctaatgtaagtcataatctattaatagttcaggactcatttaaacgttaatctggaaattaaggca 39837429  T
Q  207 taatctaaatcgaaaatcatgtcgtctttagcttctgattagtactgtccttgagagtaacactcttcttgttctagtacttttttcgtatatatattcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39837428 taatctaaatcgaaaatcatgtcgtctttagcttctgattagtactgtccttgagagtaacactcttcttgttctagtacttttttcgtatatatattcc 39837329  T
Q  307 cattattttctagttctatctcttccttactgcttttagcatatattgctcttataaaaaacaatcatagttaggcccgcccaatatattgcactttaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||    
T  39837328 cattattttctagttctatctcttccttactgcttttagcatatattgctcttat--caaacaatcatagataggcccgcccaatatattgcactttaat 39837231  T
Q  407 aatgtatgaaatgattttagttttattttaaaatttatgtagcggatctgtatgagatatataaacgttattaagtgatgtaccatttgtgtaactttaa 506  Q
    |||||||||||||||||||||||| ||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39837230 aatgtatgaaatgattttagttttgttttaaaattta-------------tatgagatatataaacgttattaagtgatgtaccatttgtgtaactttaa 39837144  T
Q  507 attggtgtaatttaatctctcctcttcctaaatatgacacatacatcaatgtcaaaaacaggtgtttgtggaacactaaatatacnnnnnnngtgaatcg 606  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||     
T  39837143 attggtgtaatttgatctctcctcttcctaaatatgacacatacatcaatgtcaaaaacaggcgtttgtggaacactaaatatactttttttgtgaatca 39837044  T
Q  607 gtatcatttgggcgtaattacagagactagtcattcgaggtttggtag 654  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  39837043 gtatcatttgggcgtaattacagagattagtcattcga-gtttggtag 39836997  T

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