View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-6 (Length: 339)
Name: NF0219-INSERTION-6
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-6 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 35138372 - 35138061
Alignment:
| Q |
12 |
ggtcattggcatagaacacttgtataatacttgattttttatgccgaaagatccattcatccatataacttattatgtcaacgtccacctaaatctcaat |
111 |
Q |
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| T |
35138372 |
ggtcattggcatagaacacttgtataatacttgattttttatgccgaaagatccattcatccatataacttattctgtcaacgtccacctaaatttcaat |
35138273 |
T |
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| Q |
112 |
tgattcattcgcaaacnnnnnnnnnnaatcaaatccatttgtacactaactaggatcttcttcttagtttctcaagataaatggagtcttccatatttgg |
211 |
Q |
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| T |
35138272 |
tgattcattcgtaaacttttttttt-aatcaaatccatttgtacactaactaggatcttcttcttagtttttcaagatcaatggagtcttccatatttgg |
35138174 |
T |
|
| Q |
212 |
agaaagatagaaacaaaaacatagtttatcacccttaccatcattaatttatttttaagaaatcaacttatttgtgtataatggaaaatatttctttcaa |
311 |
Q |
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|||||||||||||||||||||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138173 |
agaaagatagaaacaaaaacatag--tgtcacccttaccaccattagtttatttttaaaaaatcaacttatttgtgtataatggaaaatatttctttcaa |
35138076 |
T |
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| Q |
312 |
tttctttctttcata |
326 |
Q |
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||||||||||||||| |
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| T |
35138075 |
tttctttctttcata |
35138061 |
T |
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