View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0219-INSERTION-7 (Length: 591)
Name: NF0219-INSERTION-7
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-7 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 1361261 - 1360929
Alignment:
| Q |
8 |
tggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1361261 |
tggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtg |
1361162 |
T |
|
| Q |
108 |
tgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagaggtctgttgctat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1361161 |
tgaccctttgaagctagaattttggctacttcaaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagaggtttgttgctat |
1361062 |
T |
|
| Q |
208 |
cttcattagcaattgaacccatggagacttggatttgtttggtatgtatgagtagaaagaatatgtaaaagttgaagatatgattaggaagagtatgcag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1361061 |
cttcattagcaattgaacccatggagacttggatttgtttggtatgtatgagtagaaagaatatgtaaaagttgaagatatgattaggaagagtatgcaa |
1360962 |
T |
|
| Q |
308 |
gagttgaagatatagtagcactcgaagtcttaa |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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|
| T |
1360961 |
gagttgaagatatagtagcagtcgaagtcttaa |
1360929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 379 - 591
Target Start/End: Complemental strand, 1360895 - 1360683
Alignment:
| Q |
379 |
agttatttttgtataaacaatcactgccacgtgtgacacgcattcaaatatataattacttgtgaaaaacacatccaatccaacgttattttatttccac |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1360895 |
agttatttttgtataaacaatcactgccacgtgtgacacgcattcaaatatattattacttgtaaaaaacacatccaatccaacgttattttatttccac |
1360796 |
T |
|
| Q |
479 |
gaggaggctatgctcttccacgagagccatgcaatgattattttattgtaaaatagaaagaagattgtgttttggccttttgggattgatactttcactg |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1360795 |
gaggaggctatgctcttccacgagagccatgcaatgattattttagtgtaaaatagaaagaagattgtgttttggccttttgggattgattctttcactg |
1360696 |
T |
|
| Q |
579 |
ttggtgttggttc |
591 |
Q |
| |
|
||||||||||||| |
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|
| T |
1360695 |
ttggtgttggttc |
1360683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 1354375 - 1354135
Alignment:
| Q |
8 |
tggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1354375 |
tggtaaaggcaatcttaccaatttgatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtg |
1354276 |
T |
|
| Q |
108 |
tgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagaggtctgttgcta- |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
1354275 |
tgaccctttgaagctagaattttggctacttcaaagtaagggtatatatgtcccatagctagccatgggagcattacaatatgaagaggtttgttactat |
1354176 |
T |
|
| Q |
207 |
--tcttcattagcaattgaacccatggagacttggatttgt |
245 |
Q |
| |
|
||||||||| || | |||||||| |||||||||||||| |
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|
| T |
1354175 |
cttcttcattaacagtagaacccatcaagacttggatttgt |
1354135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 20492062 - 20491873
Alignment:
| Q |
7 |
atggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagt |
106 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||| ||| | |||||||| ||| |||||||| ||||||||||| |||||||| |||||||||||||| |
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|
| T |
20492062 |
atggtaaaggtgattttaccaaattgatgaatggttgaattgctttgggtgctttgggcatttgatcaatgtttttgggggagtttatgaaggtgacagt |
20491963 |
T |
|
| Q |
107 |
gtgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagagg |
196 |
Q |
| |
|
|||||||||| ||| ||| |||| |||| ||||| |||||||| |||||||||||||| ||||| |||| |||||||| ||||||||| |
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|
| T |
20491962 |
gtgacccttttgagcaagaatttttgctaactcgaaataagggtacatgtgtcccatagctagccaagggatcattacaacatgaagagg |
20491873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 556 - 590
Target Start/End: Original strand, 3203441 - 3203475
Alignment:
| Q |
556 |
ttttgggattgatactttcactgttggtgttggtt |
590 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3203441 |
ttttgggatcgatactttcactgttggtgttggtt |
3203475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 14588350 - 14588164
Alignment:
| Q |
7 |
atggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagt |
106 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
14588350 |
atggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagt |
14588251 |
T |
|
| Q |
107 |
gtgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaag |
193 |
Q |
| |
|
|||||| ||| ||| ||| ||||||||| ||||| |||| ||||||||||||||| |||||||| | |||||||| |||||| |
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|
| T |
14588250 |
gtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggtaccattacaacatgaag |
14588164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 14622008 - 14621822
Alignment:
| Q |
7 |
atggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagt |
106 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
14622008 |
atggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaacgtgacagt |
14621909 |
T |
|
| Q |
107 |
gtgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaag |
193 |
Q |
| |
|
|||||| ||| ||| ||| ||||||||| ||||| |||| ||||||||||||||| |||||||| | |||||||| |||||| |
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|
| T |
14621908 |
gtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggtaccattacaacatgaag |
14621822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 12845867 - 12845695
Alignment:
| Q |
24 |
accaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtgtgaccctttgaagcta |
123 |
Q |
| |
|
|||||||| |||||||||| || |||| || ||||||||||| |||||||| ||||||||| ||| |||||||| ||| |||||||||| ||| | |
|
|
| T |
12845867 |
accaattttatgaatggttgaagaattttaggggtttttggcatgtggtcaatatttttagggctgtttatgaaggtaacatagtgacccttttgagcaa |
12845768 |
T |
|
| Q |
124 |
gagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagagg |
196 |
Q |
| |
|
|| | ||||| | || || ||||||||||||||||||||||| |||||||| | |||||||| ||||||||| |
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|
| T |
12845767 |
gaatcttggccaactcaaaataagggtatatgtgtcccatagctagccatggaaccattacaacatgaagagg |
12845695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 11529890 - 11529703
Alignment:
| Q |
9 |
ggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtgt |
108 |
Q |
| |
|
||||| || ||| ||||||| || |||||||| | ||| | ||| |||||||| || ||||| |||||||||||||| ||| | || ||||||||||||| |
|
|
| T |
11529890 |
ggtaagggtaattttaccaaattgatgaatggctgaattgcttttggtgttttgggaatttgatcaatgtttttaggagaggttattaaggtgacagtgt |
11529791 |
T |
|
| Q |
109 |
gaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagagg |
196 |
Q |
| |
|
|||||||| ||| ||| ||||||| | ||| || ||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
11529790 |
gacccttttgagcaagaattttggccaattcaaaataagggtatatgtgtcccatagctagccaagggagcattgcaacatgaagagg |
11529703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 51370543 - 51370715
Alignment:
| Q |
24 |
accaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtgtgaccctttgaagcta |
123 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||| ||| || ||||| ||||||||||| || |||||||| ||||||||||||||||| ||| ||| | |
|
|
| T |
51370543 |
accaaattgatgaatggttgaattgttttgggtggtttaggaatttgatcaatgtttttgggagagttgataaaggtgacagtgtgaccattttgagcaa |
51370642 |
T |
|
| Q |
124 |
gagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagagg |
196 |
Q |
| |
|
|| ||||||| | || || |||||| || |||||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
51370643 |
gaattttggccaactcaaaataagggagtacgtgtcccatagcaagccatgggagcattgcaacatgaagagg |
51370715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 29953927 - 29953738
Alignment:
| Q |
7 |
atggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagt |
106 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||| ||| |||||||||| ||| || ||||| |||||| || || ||| | || || |||||||| |
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|
| T |
29953927 |
atggtaaaggtgattttaccaaattgatgaatggttgaattgttttgggtggtttcggaatttgatcaatgattccgggagagcttataaatgtgacagt |
29953828 |
T |
|
| Q |
107 |
gtgaccctttgaagctagagttttggctacttcgaagtaagggtatatgtgtcccatagccagccatgggagcattacaatatgaagagg |
196 |
Q |
| |
|
||||| ||| ||| ||| | ||||| | ||||| ||||||||||||||||||||||| || || ||||||||||| | ||||||||| |
|
|
| T |
29953827 |
gtgacgattttgagcaagaatcttggccaactcgaaataagggtatatgtgtcccatagcgagtcaagggagcattacgacatgaagagg |
29953738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 47073259 - 47073206
Alignment:
| Q |
8 |
tggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttt |
61 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
47073259 |
tggtaaaggcaaccttactaatttgataaatgcttcaatggttttgggtgtttt |
47073206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 26970707 - 26970760
Alignment:
| Q |
8 |
tggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttt |
61 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||| |||||||||||| |||||||| |
|
|
| T |
26970707 |
tggtaaaggcaaccttactaatttgataaatgcttcaatggttttaggtgtttt |
26970760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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