View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219-INSERTION-9 (Length: 604)
Name: NF0219-INSERTION-9
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219-INSERTION-9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 6 - 604
Target Start/End: Original strand, 27066567 - 27067165
Alignment:
| Q |
6 |
cacggaggctgtgtaggtggtgaattttacgttaggaatgttgctttcttcagggtaggctttgaattcaccgaatccagccatggatttagtgccgtag |
105 |
Q |
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| T |
27066567 |
cacggaggctgtgtaggtggtgaattttaggttaggaatgttgctttcttcagagtaggctttgaattcaccgaatccagccatggatttagtgccgtag |
27066666 |
T |
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| Q |
106 |
ctgttgaaggcttgcacaccctcattgttgtttaaggcgtagtttttgaaactgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgt |
205 |
Q |
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| T |
27066667 |
ctgttgaaggtttgcacaccctcattgttgtttaaggcgtagtttttgaaactgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgt |
27066766 |
T |
|
| Q |
206 |
gtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattccattgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaa |
305 |
Q |
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| T |
27066767 |
gtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattccattgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaa |
27066866 |
T |
|
| Q |
306 |
ggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcag |
405 |
Q |
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| T |
27066867 |
ggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcag |
27066966 |
T |
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| Q |
406 |
aactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaag |
505 |
Q |
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| T |
27066967 |
aattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaag |
27067066 |
T |
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| Q |
506 |
atggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttcttctctttttcatgattta |
604 |
Q |
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| T |
27067067 |
atggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttcttctctttttcatgattta |
27067165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 388 - 584
Target Start/End: Original strand, 27080633 - 27080829
Alignment:
| Q |
388 |
agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg |
487 |
Q |
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| T |
27080633 |
agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg |
27080732 |
T |
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| Q |
488 |
ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggtt |
584 |
Q |
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| T |
27080733 |
ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttggtt |
27080829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 375 - 580
Target Start/End: Original strand, 27053747 - 27053952
Alignment:
| Q |
375 |
cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg |
474 |
Q |
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| T |
27053747 |
cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg |
27053846 |
T |
|
| Q |
475 |
ctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatg |
574 |
Q |
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| T |
27053847 |
ctaagtggtgacgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatg |
27053946 |
T |
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| Q |
575 |
ggtttt |
580 |
Q |
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| T |
27053947 |
agtttt |
27053952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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