View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0219_high_11 (Length: 260)
Name: NF0219_high_11
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 48467649 - 48467873
Alignment:
| Q |
29 |
acatcatacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48467649 |
acatcatacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaa |
48467748 |
T |
|
| Q |
129 |
cgataacgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaa |
228 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48467749 |
caataacgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaa |
48467848 |
T |
|
| Q |
229 |
atctgatatctttggattcatctca |
253 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48467849 |
atctgatatctttggattcatctca |
48467873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 48869736 - 48869535
Alignment:
| Q |
44 |
gagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaacgataacgcattatt |
143 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
48869736 |
gagtatatgccttttctgacataatcgggaggcacatacccactacaaaaggcaatacatgtggttagagtcatccaaggaacaacg--------tcatt |
48869645 |
T |
|
| Q |
144 |
gattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaaatctgatatctttgg |
243 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48869644 |
gattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaaatctgatatctttgg |
48869545 |
T |
|
| Q |
244 |
attcatctca |
253 |
Q |
| |
|
|||||||||| |
|
|
| T |
48869544 |
attcatctca |
48869535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 48885422 - 48885221
Alignment:
| Q |
44 |
gagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaacgataacgcattatt |
143 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
48885422 |
gagtatatgccttttctgacataatcgggaggcacatacccactacaaaaggcaatacatgtggttagagtcatccaaggaacaacg--------tcatt |
48885331 |
T |
|
| Q |
144 |
gattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaaatctgatatctttgg |
243 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48885330 |
gattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaaatctgatatctttgg |
48885231 |
T |
|
| Q |
244 |
attcatctca |
253 |
Q |
| |
|
|||||||||| |
|
|
| T |
48885230 |
attcatctca |
48885221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 48476517 - 48476739
Alignment:
| Q |
35 |
tacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaac----g |
130 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || ||||||||| ||||| | |||| ||| |||||| ||| | ||||||| | |
|
|
| T |
48476517 |
tacttgggtgagtatatgccttttctgacatactcgggaggtacatacccactacaaaagccgttacaagtgattagagacattgagggaacaaacaaag |
48476616 |
T |
|
| Q |
131 |
ataacgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaaat |
230 |
Q |
| |
|
|||| || |||| |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
48476617 |
ataatacactattaattatgattaacttactacgttcccacgatcctgcttgtgtttgcttcaagttcatactttccaaaaattctagccataccaaaat |
48476716 |
T |
|
| Q |
231 |
ctgatatctttggattcatctca |
253 |
Q |
| |
|
|||| ||||| |||||||||||| |
|
|
| T |
48476717 |
ctgaaatcttaggattcatctca |
48476739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 48483829 - 48484054
Alignment:
| Q |
35 |
tacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaa------aggca-atacacgtggttagagtcatccaaggaaca |
127 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| ||||| || ||||||||| ||| |||| || || ||| |||||| |||| | |||||| |
|
|
| T |
48483829 |
tacttgggtgagtatatgccttttttgacatactccggaggtacatacccactacaaagtacaaaggccgattcaagtgattagagacatcgagggaaca |
48483928 |
T |
|
| Q |
128 |
acgataacgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaa |
227 |
Q |
| |
|
| |||||| ||||| |||||| |||||||||||| ||||| || ||||||||||| || |||||||||||||||||| | |||| | |||||||||||| |
|
|
| T |
48483929 |
aagataacacattactgattatgatttacttactatgttcctactatcctgcttgtgtttgcttcaagttcatacttcccgaaaattctagccataccaa |
48484028 |
T |
|
| Q |
228 |
aatctgatatctttggattcatctca |
253 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48484029 |
aatctgatatctttggattcatctca |
48484054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 38820233 - 38820012
Alignment:
| Q |
29 |
acatcatacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38820233 |
acatcatacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggagcaa |
38820134 |
T |
|
| Q |
129 |
cgataacgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaa |
228 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38820133 |
cgataacacattattaattaaaatttacttactacgttcccacgatcctgcttgtatttacttcaagttcatacttctcaaaaagtttagccataccgaa |
38820034 |
T |
|
| Q |
229 |
atctgatatctttggattcatc |
250 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
38820033 |
atctaatatctttggattcatc |
38820012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 2672566 - 2672523
Alignment:
| Q |
206 |
tcaaaaagtttagccataccaaaatctgatatctttggattcat |
249 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
2672566 |
tcaaaaattctagcaataccaaaatctgatatctttggattcat |
2672523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 134 times since January 2019
Visitors: 2407