View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0219_high_2 (Length: 494)
Name: NF0219_high_2
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 24 - 484
Target Start/End: Complemental strand, 3088278 - 3087818
Alignment:
| Q |
24 |
catgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatgg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
3088278 |
catgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaagg |
3088179 |
T |
|
| Q |
124 |
cagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaataagagcacatgacaaaaataactacatatacaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3088178 |
cagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaatatgagcacatgacaaaaataactacatatacaaa |
3088079 |
T |
|
| Q |
224 |
tagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgaagtggacttgtccatctatatttgtaccagtgcctaatttgat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088078 |
tagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgtagtggacttgtccatctatatttgtaccagtgcctaatttgat |
3087979 |
T |
|
| Q |
324 |
caggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087978 |
caggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatc |
3087879 |
T |
|
| Q |
424 |
atatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087878 |
atatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataa |
3087818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2579 times since January 2019
Visitors: 2401