View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219_high_3 (Length: 456)
Name: NF0219_high_3
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 446
Target Start/End: Original strand, 45461580 - 45462017
Alignment:
| Q |
30 |
aggtggccgtatatgctgctggctgaaaatatgttgttaattaaatttccgaaaggtataaacaatttgtcatgtaatatattaattaaccgaaagcaaa |
129 |
Q |
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| T |
45461580 |
aggtggccgtatatgctgctggctgaaaataggttgttaattaaatttccgaaaggtataaacaatttgtcatgtaatat--taattaaccgaaagcaaa |
45461677 |
T |
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| Q |
130 |
tattgacactgatcatcata-------------gttggttggttgttatctgttgttaattatctataataaccatccatccaaaaataataaaattaat |
216 |
Q |
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| T |
45461678 |
tattgacactgatcatcatcataataaaacatggttggttggttgttatttgttgttaattatctataataaccatccatccaaaaataataaaattaat |
45461777 |
T |
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| Q |
217 |
taagaagcaaaagtcgtacaaattaaagag----------aggggaagcaagatgaaaatgaaatgagtaccgtttttgctgtggttgatacgggtagag |
306 |
Q |
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| T |
45461778 |
taagaagcaaaagtcgtacaaattaaagagcatgaaattgaggggaagcaagatgaaaatgaaatgagtaccgtttttgcggtggttgatacgggtagag |
45461877 |
T |
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| Q |
307 |
agagcaagacatagacgcctgacagggaaaatcatagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactactgtct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461878 |
agagcaagacatagacgcctgacagggaaaatcatagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactactgtct |
45461977 |
T |
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| Q |
407 |
tcttcttccttttcttgttctttccatgcccttgcctatg |
446 |
Q |
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| T |
45461978 |
tcttcttccttttcttgttctttccatgcccttgcctatg |
45462017 |
T |
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