View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219_high_4 (Length: 423)
Name: NF0219_high_4
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 409
Target Start/End: Original strand, 39837623 - 39838010
Alignment:
| Q |
30 |
ggtacttggtacaaactatttatcaaa----atatgtcagtggattttgtggtaagtggaatctgagtattatatcttcatgtacgtgaaaagttcaagt |
125 |
Q |
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| T |
39837623 |
ggtacttggtacagactatttatcaaacaaaatatgtcagtggattttgtggtaaatggaatctgagtattatatcttcatgtacgtgaaaagttcaagt |
39837722 |
T |
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| Q |
126 |
taaaatctcagtgctgaatctgcatatgttatcggattatcagctatat----tgctttataagttcttcaacttnnnnnnnnnnnnnnnnnnntcaaac |
221 |
Q |
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| T |
39837723 |
taaaatctcagtgctgaatctgcatatgttatcggactatcagctatatatattgctttataagttcttcaacttaaaattaaaaaaataaaaatcaaac |
39837822 |
T |
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| Q |
222 |
tagtgctttcataatgccatagattattgagcattatttaattatcgattgctgaaaatagttaactctctggtgctttcatttcgtttctgaaaataca |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39837823 |
tagtgctttcataatgccatagattattgagcattatttaattatcgattgctgaaaatagttaactctttggtgctttcatttcgtttctgaaaataca |
39837922 |
T |
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| Q |
322 |
cggacattttatagattacaatcaatcattccaaaaaattatatatacaaaaggagttattatccaaaatagaaaccaatgatcagtt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39837923 |
cggacattttatagattacaatcaatcattccaaaaaattatatatacaaaaggagttattatccaaaaaagaaaccaatgatcagtt |
39838010 |
T |
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