View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219_high_7 (Length: 275)

Name: NF0219_high_7
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219_high_7
NF0219_high_7
[»] chr6 (9 HSPs)
chr6 (116-267)||(29743303-29743450)
chr6 (109-267)||(28996743-28996897)
chr6 (116-267)||(33229336-33229483)
chr6 (109-251)||(398630-398768)
chr6 (109-267)||(18339119-18339273)
chr6 (111-264)||(13837836-13837985)
chr6 (109-264)||(34948761-34948912)
chr6 (124-178)||(31028449-31028503)
chr6 (111-178)||(24697902-24697969)
[»] chr4 (32 HSPs)
chr4 (109-267)||(10352884-10353038)
chr4 (109-267)||(30077631-30077785)
chr4 (1-103)||(1194386-1194488)
chr4 (109-267)||(36382346-36382499)
chr4 (109-267)||(30216742-30216896)
chr4 (131-267)||(1817752-1817884)
chr4 (109-265)||(50205079-50205231)
chr4 (124-267)||(29995983-29996122)
chr4 (116-267)||(44156671-44156818)
chr4 (109-251)||(3292912-3293050)
chr4 (116-249)||(42333794-42333923)
chr4 (109-249)||(43143602-43143738)
chr4 (124-267)||(48989356-48989495)
chr4 (109-251)||(13012201-13012339)
chr4 (109-251)||(6690251-6690389)
chr4 (109-267)||(25930721-25930875)
chr4 (109-251)||(20129323-20129461)
chr4 (109-251)||(28877266-28877404)
chr4 (109-251)||(47500786-47500924)
chr4 (124-267)||(26448081-26448219)
chr4 (124-264)||(40529043-40529179)
chr4 (124-248)||(17511252-17511373)
chr4 (155-267)||(6235579-6235687)
chr4 (118-264)||(29319708-29319850)
chr4 (180-251)||(13392897-13392968)
chr4 (180-251)||(13396036-13396107)
chr4 (109-251)||(26439295-26439433)
chr4 (109-251)||(34407300-34407438)
chr4 (110-251)||(43355918-43356055)
chr4 (180-251)||(35546033-35546104)
chr4 (109-226)||(30109969-30110084)
chr4 (116-196)||(48129986-48130062)
[»] chr3 (16 HSPs)
chr3 (109-267)||(19565501-19565655)
chr3 (109-267)||(45335888-45336041)
chr3 (109-251)||(6930910-6931048)
chr3 (109-267)||(33040966-33041120)
chr3 (109-251)||(34084138-34084276)
chr3 (109-267)||(45182994-45183148)
chr3 (110-267)||(27935192-27935345)
chr3 (109-267)||(11018212-11018366)
chr3 (124-251)||(6269442-6269565)
chr3 (124-251)||(19390174-19390297)
chr3 (116-267)||(35514286-35514429)
chr3 (116-251)||(22968460-22968591)
chr3 (108-267)||(40081741-40081894)
chr3 (109-251)||(39771803-39771941)
chr3 (109-249)||(6503587-6503723)
chr3 (118-226)||(5135291-5135397)
[»] chr5 (20 HSPs)
chr5 (116-267)||(43068897-43069044)
chr5 (109-267)||(37254654-37254808)
chr5 (110-267)||(33430335-33430488)
chr5 (111-267)||(17332551-17332703)
chr5 (109-264)||(39657509-39657660)
chr5 (109-251)||(13817990-13818128)
chr5 (126-264)||(16333879-16334013)
chr5 (109-251)||(26283334-26283472)
chr5 (109-267)||(31680380-31680534)
chr5 (111-264)||(10033942-10034091)
chr5 (128-267)||(36291403-36291538)
chr5 (109-251)||(1776392-1776530)
chr5 (109-251)||(3155647-3155785)
chr5 (109-251)||(12278876-12279014)
chr5 (116-267)||(16155017-16155164)
chr5 (116-251)||(31501732-31501863)
chr5 (124-251)||(36293637-36293760)
chr5 (109-251)||(39434709-39434847)
chr5 (119-251)||(19985962-19986090)
chr5 (109-226)||(28801300-28801415)
[»] chr8 (13 HSPs)
chr8 (109-267)||(36408564-36408718)
chr8 (109-249)||(34136843-34136979)
chr8 (109-267)||(29728386-29728540)
chr8 (116-264)||(15838306-15838449)
chr8 (109-267)||(16788025-16788179)
chr8 (110-267)||(3648794-3648947)
chr8 (118-267)||(9877242-9877387)
chr8 (109-249)||(4404021-4404157)
chr8 (109-251)||(23402121-23402259)
chr8 (128-267)||(42230971-42231104)
chr8 (109-251)||(39914528-39914665)
chr8 (116-267)||(2729196-2729343)
chr8 (124-226)||(3435297-3435397)
[»] scaffold0041 (1 HSPs)
scaffold0041 (116-267)||(52945-53092)
[»] chr7 (17 HSPs)
chr7 (109-248)||(34389075-34389210)
chr7 (127-266)||(38638237-38638372)
chr7 (116-267)||(40920003-40920150)
chr7 (109-267)||(35090181-35090335)
chr7 (109-267)||(36630829-36630983)
chr7 (109-251)||(14777123-14777261)
chr7 (125-267)||(26624775-26624913)
chr7 (109-267)||(37002144-37002298)
chr7 (109-264)||(3114099-3114250)
chr7 (109-251)||(8394138-8394276)
chr7 (109-265)||(8867733-8867885)
chr7 (109-264)||(5555500-5555651)
chr7 (109-267)||(43184468-43184622)
chr7 (110-251)||(33685578-33685715)
chr7 (124-267)||(36658209-36658348)
chr7 (180-267)||(7002805-7002892)
chr7 (180-267)||(7048676-7048763)
[»] chr2 (19 HSPs)
chr2 (109-267)||(45418596-45418750)
chr2 (109-266)||(771012-771165)
chr2 (110-267)||(44084603-44084756)
chr2 (109-264)||(16405613-16405764)
chr2 (109-251)||(6403820-6403958)
chr2 (109-264)||(42439999-42440150)
chr2 (109-251)||(41251650-41251788)
chr2 (116-264)||(35962735-35962879)
chr2 (124-267)||(12756837-12756976)
chr2 (109-266)||(8147364-8147518)
chr2 (124-251)||(2285890-2286013)
chr2 (118-249)||(8059351-8059478)
chr2 (109-264)||(32127144-32127295)
chr2 (116-250)||(18981636-18981766)
chr2 (109-267)||(31581622-31581776)
chr2 (109-251)||(17445057-17445193)
chr2 (116-267)||(26162702-26162846)
chr2 (116-237)||(2958131-2958247)
chr2 (124-226)||(4555250-4555350)
[»] chr1 (10 HSPs)
chr1 (109-267)||(3828997-3829150)
chr1 (109-266)||(17445326-17445479)
chr1 (109-267)||(32982056-32982210)
chr1 (116-267)||(321377-321524)
chr1 (109-251)||(26144268-26144406)
chr1 (111-267)||(42310941-42311093)
chr1 (109-248)||(35907565-35907700)
chr1 (109-264)||(7433458-7433609)
chr1 (118-226)||(41972314-41972420)
chr1 (138-206)||(23313281-23313345)
[»] scaffold2142 (1 HSPs)
scaffold2142 (109-251)||(535-673)
[»] scaffold0502 (1 HSPs)
scaffold0502 (109-267)||(5243-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (109-251)||(31493-31631)
[»] scaffold0002 (1 HSPs)
scaffold0002 (109-251)||(480473-480611)
[»] scaffold0069 (1 HSPs)
scaffold0069 (116-251)||(17862-17993)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 29743303 - 29743450
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    
T  29743303 cgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacag----aaagaaaaatttgggcaatctgaaaattcttac 29743398  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29743399 acgcaaataggtctcggaattttatttagcacactagtgccggattcatctc 29743450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 28996743 - 28996897
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| || |||| ||||||||||||| | ||||||| |||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  28996743 ggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 28996838  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  28996839 ttctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 33229483 - 33229336
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| |||||| ||||||  |||||||| |||||| |||||| |||||||||||||     ||||||||||||||||| ||||||||||||||||||    
T  33229483 cgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacattt----ccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| ||||| ||||||| |||||||||||||||||| || ||||||||||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 398630 - 398768
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  398630 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 398725  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  398726 ttgtcacacgtaaataggtcttggaattttatttggcacacta 398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 18339119 - 18339273
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||| | |||||   ||||||||| ||||||    |||||||| ||||| |||||||||||    
T  18339119 ggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaa----aaagaaaattttgggcaatctgaaaa 18339214  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  18339215 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 264
Target Start/End: Original strand, 13837836 - 13837985
Alignment:
Q  111 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 210  Q
    ||||||||| || |||||||||||||  ||||||||  ||||| |||||  ||| |||||||||||||    |||||||||||||| |||||||||||||    
T  13837836 tcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 13837931  T
Q  211 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
     | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  13837932 gtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 34948912 - 34948761
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| | ||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  34948912 ggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 34948817  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||| ||||||| ||| | ||||||||||||||||||| || ||| |||||    
T  34948816 ttgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 31028503 - 31028449
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaa 178  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  31028503 atcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaa 31028449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 24697969 - 24697902
Alignment:
Q  111 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaa 178  Q
    |||| ||||||||||||||||||||| ||||||||  |||||| |||||  |||||||||| ||||||    
T  24697969 tcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaa 24697902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 10353038 - 10352884
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||    || ||||||||||| |||||||||||    
T  10353038 ggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaa----aaggaaaaatttgggcaatctgaaaa 10352943  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10352942 ttcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctc 10352884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 30077785 - 30077631
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  30077785 ggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaa----aaagaaaaatttggacaatctgaaaa 30077690  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || |||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  30077689 tttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctc 30077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1194386 - 1194488
Alignment:
Q  1 actctgaaacgccattagaaaaaggggttgccctgcttgacaaatttgttgttccttcttcaaataatcagtttgtttcttaaacttcttctcccttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1194386 actctgaaacgccattagaaaaaggggttgccctgcttgacaaatttgttgttgcttcttcaaataatcagtttgtttcttaaacttcttctcccttcat 1194485  T
Q  101 tgt 103  Q
    |||    
T  1194486 tgt 1194488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 36382499 - 36382346
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  |||||||||||| |||||||||||||||||     |||||||||||||||||||||||||    
T  36382499 ggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-----aagaaaaatttggacaatctgaaaa 36382405  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  36382404 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 30216896 - 30216742
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||||||    |||||||||||||| |||||||||||    
T  30216896 ggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 30216801  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||| |||||||| ||||||||||||||||||||||||| || ||| ||||||||    
T  30216800 ttctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  131 atttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctc 230  Q
    |||||| |||||||||||||| | |||||| |||||| |||||||     |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacattta----taaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctc 1817847  T
Q  231 ggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  1817848 ggaattttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 50205231 - 50205079
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| || |||| ||||||||||||| |||||||||||||||| |||||   ||||||||| ||||||    ||||||||| ||||||||||||||||    
T  50205231 ggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaa----aaagaaaaaattggacaatctgaaaa 50205136  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatc 265  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||    
T  50205135 ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 29996122 - 29995983
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    |||||||||||||  ||||||||  |||||||||||| ||||||||||||||| |    |||||||||||||| |||||||||||||||| |||||||||    
T  29996122 atcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacga----aaagaaaaatttgggcaatctgaaaattcttgcacgcaaat 29996027  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || ||||||||||||||| ||||||||| || ||||||||||||    
T  29996026 agttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 44156671 - 44156818
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||||| ||||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    |||||||| |||||||||||||||||||||  |    
T  44156671 cgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaattttggacaatctgaaaattctctc 44156766  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  44156767 acgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 3293050 - 3292912
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  3293050 ggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 3292955  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  3292954 ttctcacacgcaaataggtctcggaattttatttagcacacta 3292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 42333923 - 42333794
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||||||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| ||||||||||||||| ||    
T  42333923 cgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcac 42333828  T
Q  216 acgcaaataggtctcggaattttatttagcacac 249  Q
    ||||||||||||||||||||||||||||||||||    
T  42333827 acgcaaataggtctcggaattttatttagcacac 42333794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 43143738 - 43143602
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  43143738 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 43143643  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacac 249  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  43143642 ttctcacacgcaaataggtctcggaattttatttagcacac 43143602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 48989356 - 48989495
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| ||||||| | |||||  |||||| |||||||||| ||||||    |||||||||||||| ||||||||||||||| | ||||||||    
T  48989356 atcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcatacgcaaat 48989451  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||||||||||||||||| || ||| ||||||||    
T  48989452 aggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 13012201 - 13012339
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  13012201 ggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 13012296  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  13012297 ttgtcacacgtaaataggtcttggaattttatttggcacacta 13012339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6690389 - 6690251
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| ||| |||||||    
T  6690389 ggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaaactgaaaa 6690294  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  6690293 ttctcacacgcaaataggtctcgaaattttatttagcacacta 6690251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 25930721 - 25930875
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  ||||| |||||  |||||||||||||||||    |||||||||||||| |||| ||||||    
T  25930721 ggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaa 25930816  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  25930817 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 20129323 - 20129461
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  20129323 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 20129418  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| ||||||||||  ||||||||||| ||||||||    
T  20129419 ttgtcacacgtaaataggtcttagaattttatttggcacacta 20129461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 28877404 - 28877266
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    ||||||| |||||  ||||||||||||| |||||||||| ||||| ||||| | ||||||||  ||| ||    ||||||||||||||  ||||| ||||    
T  28877404 ggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataa----aaagaaaaatttgggaaatctaaaaa 28877309  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  28877308 ttctcacacgcaaataggtctcggaattttatttagcacacta 28877266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 47500786 - 47500924
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||      ||||||||||||||| |||| ||||||    
T  47500786 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----tgaaaagaaaaatttgggcaatttgaaaa 47500881  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  47500882 ttgtcacacgtaaataggtcttggaattttatttggcacacta 47500924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 26448081 - 26448219
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| ||||||| ||| |||| |||||| |||||||||| ||||||     || |||||||||| ||||||||||||||| | || |||||    
T  26448081 atcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaa-----aaaaaaaatttgggcaatctgaaaattctcatacacaaat 26448175  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||||||||||||||||||||||| || |||||| |||||    
T  26448176 aggtttcggaattttatttagcacactattggcggatttatctc 26448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 124 - 264
Target Start/End: Original strand, 40529043 - 40529179
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| ||||||| |  ||||| ||||  ||||||||||||||||||    ||||||||||||||||||| |||||||| | ||| ||||||    
T  40529043 atcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaa----aaagaaaaatttggacaatttgaaaattgtcacatgcaaat 40529138  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    |||||| ||||||||||||||||||||| || ||| |||||    
T  40529139 aggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 17511373 - 17511252
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||| |||||||| ||||||||||||    
T  17511373 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaattgttacacgcaaat 17511278  T
Q  224 aggtctcgg-aattttatttagcaca 248  Q
    |||||| || ||||||||||||||||    
T  17511277 aggtcttggaaattttatttagcaca 17511252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 6235579 - 6235687
Alignment:
Q  155 aaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtg 254  Q
    |||||| |||||||||||||||||    |||||||||||||| |||| |||||||| | |||||||||||||||| ||||||||||||||||||||| ||    
T  6235579 aaaagtccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattg 6235674  T
Q  255 tcggattcatctc 267  Q
     ||| ||||||||    
T  6235675 acgggttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 29319850 - 29319708
Alignment:
Q  118 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 217  Q
    ||||| ||||||||||||| |||||||||  ||||| ||||   |||||||||||||||||    |||||||||||||  ||||||||||||| | ||||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaa----aaagaaaaatttgagcaatctgaaaattgtcacac 29319755  T
Q  218 gcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
     |||||| |||| ||||||||||||||||||||| || ||| |||||    
T  29319754 acaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 13392968 - 13392897
Alignment:
Q  180 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  13392968 caaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacacta 13392897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 13396107 - 13396036
Alignment:
Q  180 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  13396107 caaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacacta 13396036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 26439433 - 26439295
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  26439433 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 26439338  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  26439337 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 26439295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 34407438 - 34407300
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  34407438 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 34407343  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  34407342 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 34407300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 43355918 - 43356055
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| ||||||||||||    
T  43355918 gtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaat 43356013  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    | | ||||| |||||||||| | ||||||||||  |||||||    
T  43356014 tgtcacacgtaaataggtcttgaaattttatttgacacacta 43356055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 35546033 - 35546104
Alignment:
Q  180 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  35546033 caaaaagaaaattttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacacta 35546104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 30109969 - 30110084
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggac--aatctgaa 206  Q
    |||||| ||| ||| ||||||||||||| ||||||||| |||| |  ||||  |||||||||| |||    |||||||||||||||||||  ||| ||||    
T  30109969 ggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacactta----caaaaagaaaaatttggacaaaatatgaa 30110064  T
Q  207 aattcttacacgcaaatagg 226  Q
    || ||| |||||||||||||    
T  30110065 aaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 48129986 - 48130062
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg 196  Q
    ||||||| ||||||||||||| || |||||| |||||| ||||| ||||||||||| |||    |||||||||||||||||    
T  48129986 cgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacactta----caaaaagaaaaatttgg 48130062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 19565655 - 19565501
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| |||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||    ||||||||||||||||||||||||||    
T  19565655 ggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaa----aaagaaaaatttggacaatctgaaaa 19565560  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  19565559 ttcttacacgcaaataggtctcggaattttatttagcacactagtaccggattcatctc 19565501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 45335888 - 45336041
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    |||||||||| ||| |||||||||||    
T  45335888 ggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagt-cattaacacatttacaa----aaagaaaaatctgggcaatctgaaaa 45335982  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45335983 ttcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctc 45336041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6931048 - 6930910
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | |||||||||||||| |||||   ||||||||||||||||    |||||||||||| | |||||||||||    
T  6931048 ggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaa----aaagaaaaatttaggcaatctgaaaa 6930953  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  6930952 ttctcacacgcaaataggtctcggaattttatttagcacacta 6930910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 33040966 - 33041120
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||||||||||| || |||||||||| || |||||| |||||| ||||| | ||||||||| ||||||    ||||||||||||| ||||| ||||||    
T  33040966 ggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgaacaatttgaaaa 33041061  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  33041062 ttttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 34084276 - 34084138
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||| ||| ||||||||||||| ||||||| || |||||||||||| |||||||||||||||||    |||||||||||||| |||| ||||||    
T  34084276 ggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatatgaaaa 34084181  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | |||||||||||||||| |||||||||||||||||||||    
T  34084180 ttatcacacgcaaataggtcttggaattttatttagcacacta 34084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 45182994 - 45183148
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  45182994 ggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 45183089  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| |||| ||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  45183090 ttctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 27935192 - 27935345
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||| ||||||| ||||||||||||| ||||||| | |||||| ||||| ||||||||||| ||||||    |||||||||||||| ||||||||||||    
T  27935192 gtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 27935287  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| | ||| ||||||||||||||||||||||||||| |||| || ||| ||||||||    
T  27935288 tctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 11018366 - 11018212
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| | ||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  11018366 ggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 11018271  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||||||||||||||||| |||||||||||||||||| | || ||| ||||||||    
T  11018270 ttctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 6269565 - 6269442
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  6269565 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 6269470  T
Q  224 aggtctcggaattttatttagcacacta 251  Q
    |||||| |||||||||||||||||||||    
T  6269469 aggtcttggaattttatttagcacacta 6269442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 19390174 - 19390297
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| |||||||||  ||||| ||||||  ||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  19390174 atcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 19390269  T
Q  224 aggtctcggaattttatttagcacacta 251  Q
    |||||| |||||||||||||||||||||    
T  19390270 aggtcttggaattttatttagcacacta 19390297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 35514286 - 35514429
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||  || | ||||||||||| |||||| ||||||||||        |||||||||||||||||||||| |||||||||| ||    
T  35514286 cgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca--------caaaaagaaaaatttggacaatatgaaaattctcac 35514377  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
     ||||||||||||| |||||||||||| |||||||| || ||| ||||||||    
T  35514378 tcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 22968591 - 22968460
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| |||||||||   |||| |||||  |||||||||||||||||    |||||||||||||| |||||| |||||| | ||    
T  22968591 cgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctaaaaattgtcac 22968496  T
Q  216 acgcaaataggtctcggaattttatttagcacacta 251  Q
    ||| |||||||||| | |||||||||||||||||||    
T  22968495 acgtaaataggtcttgaaattttatttagcacacta 22968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 40081894 - 40081741
Alignment:
Q  108 aggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaa 207  Q
    ||||||| ||||||| |||||||||||||  ||||||||  ||||||||| | ||||||||||||||||||    |||||||||||||| |||| |||||    
T  40081894 aggtcgcccgggctcgatcgataatttttgaacattagactcaaccaaaa-gctcattaacacatttacaa----aaagaaaaatttgggcaatttgaaa 40081800  T
Q  208 attcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| | |||||||||||| ||| || ||||| |||||||||||| || ||| ||||||||    
T  40081799 attgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 39771803 - 39771941
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| |||||||  |||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||||| |||||||||||    
T  39771803 ggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 39771898  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| | ||||||||||  |||||||    
T  39771899 ttgtcacacgtaaataggtcttgaaattttatttgacacacta 39771941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 6503723 - 6503587
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| |||||| |||||| || ||||||  ||||| |||||   |||| |||| ||||||    ||||||||||||   |||||||||||    
T  6503723 ggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaa----aaagaaaaatttaagcaatctgaaaa 6503628  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacac 249  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  6503627 ttctcacaggcaaataggtctcggatttttatttagcacac 6503587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  118 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggac--aatctgaaaattcttac 215  Q
    ||||| |||||| ||||||  |||||||| |||||| ||||| ||||||||||| |||    |||||||||||||||||||  |||| ||||||||| ||    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacactta----caaaaagaaaaatttggacaaaatccgaaaattctcac 5135386  T
Q  216 acgcaaatagg 226  Q
    || ||||||||    
T  5135387 acacaaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 43068897 - 43069044
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||| ||||||||| ||||||||| |||||| |||||| |||||||||||||||||    |||||||||||||| ||||||||||||||||||    
T  43068897 cgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattcttac 43068992  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | | ||||| |||||||||||||||||||||||||| || ||||||||||||    
T  43068993 atgtaaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 37254654 - 37254808
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| | ||||| ||||||||||||| ||||||||| |||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  37254654 ggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 37254749  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||| ||||||||    
T  37254750 ttctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| ||||||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 33430430  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  33430431 tctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 17332703 - 17332551
Alignment:
Q  111 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 210  Q
    |||| ||||||| ||||||||||||| || |||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||||    
T  17332703 tcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaatt 17332608  T
Q  211 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
     | |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  17332607 ttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 39657660 - 39657509
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    ||||| |||||||| || |||||||||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  39657660 ggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 39657565  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  39657564 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 13817990 - 13818128
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||||||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  13817990 ggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 13818085  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | |||||||||||||||| |||| ||||||||||||||||    
T  13818086 ttgtcacacgcaaataggtcttggaaatttatttagcacacta 13818128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 16334013 - 16333879
Alignment:
Q  126 cgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaatag 225  Q
    ||||||||||| |||||||||| ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgcaaatag 16333918  T
Q  226 gtctcggaattttatttagcacactagtgtcggattcat 264  Q
    |||| ||||||||||||||||||||| || |||||||||    
T  16333917 gtcttggaattttatttagcacactattgacggattcat 16333879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 26283472 - 26283334
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||     |||||||||||||||| |||||||||||    
T  26283472 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 26283377  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  26283376 ttgtcacacgtaaataggtcttggaattttatttggcacacta 26283334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 31680380 - 31680534
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  31680380 ggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 31680475  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  31680476 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 264
Target Start/End: Original strand, 10033942 - 10034091
Alignment:
Q  111 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 210  Q
    |||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||||    
T  10033942 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 10034037  T
Q  211 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
     | |||||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  10034038 gtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 267
Target Start/End: Original strand, 36291403 - 36291538
Alignment:
Q  128 ataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggt 227  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||    |||||||||||||| |||||| |||||| |||||| |||||||||    
T  36291403 ataatttttgcacattagatctaacctaaaagttcattaacacatttacaa----aaagaaaaatttgggcaatctcaaaattattacacacaaataggt 36291498  T
Q  228 ctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| |||||||||||| ||||||| || ||| ||||||||    
T  36291499 ctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 1776530 - 1776392
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| |||||||||||||  |||||| |  |||||||||||| |||||||||||||||||    |||||||||||||| |||| ||||||    
T  1776530 ggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatttgaaaa 1776435  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | |||||||||||||||| |||||||||||||||||||||    
T  1776434 ttgtcacacgcaaataggtcttggaattttatttagcacacta 1776392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 3155785 - 3155647
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||||||||||| ||| ||||||||| |||||| ||  ||||| |||||| ||||||||||||||     ||||||||||||||||||||||||||||    
T  3155785 ggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta----taaaaagaaaaatttggacaatctgaaaa 3155690  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | |||||||||||| ||| |||||||||||||||||||||    
T  3155689 ttgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 12279014 - 12278876
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||| ||| ||||||||||||| ||||||||| |||||| ||| |   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  12279014 ggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 12278919  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  12278918 ttctcacacgcaaataggtctcggaattttatttagcacacta 12278876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 16155017 - 16155164
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| |||||||||  ||||| |||||  ||||||||||||||     |||||||||||||| | ||||||||||||| | ||    
T  16155017 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta----taaaaagaaaaatttaggcaatctgaaaattgtcac 16155112  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||| ||||||||||||||||||||| || | ||||||||||    
T  16155113 acgcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 31501863 - 31501732
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||||||  |    
T  31501863 cgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcgc 31501768  T
Q  216 acgcaaataggtctcggaattttatttagcacacta 251  Q
    |||||||||||||||| |||||||||||||||||||    
T  31501767 acgcaaataggtctcgaaattttatttagcacacta 31501732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 36293760 - 36293637
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    |||||||||||||  ||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||||| ||||    
T  36293760 atcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 36293665  T
Q  224 aggtctcggaattttatttagcacacta 251  Q
    |||||| |||||||||||||||||||||    
T  36293664 aggtcttggaattttatttagcacacta 36293637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 39434709 - 39434847
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    || ||||||||||| |||||||||||    
T  39434709 ggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaa----aatgaaaaatttgggcaatctgaaaa 39434804  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||| | ||||||||||  ||||||||||||||||||||    
T  39434805 ttgtcacatgtaaataggtctttgaattttatttagcacacta 39434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 19985962 - 19986090
Alignment:
Q  119 gctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacg 218  Q
    |||| ||||||||||||| |||||||||| ||||| |||||| ||||| |||||||||||    ||||||||||||||  ||||| |||||| | |||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaa----aaagaaaaatttgggtaatctaaaaattatcacacg 19986057  T
Q  219 caaataggtctcggaattttatttagcacacta 251  Q
    ||||||||||| | ||||||||||| |||||||    
T  19986058 caaataggtcttgaaattttatttaacacacta 19986090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 28801300 - 28801415
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaa 206  Q
    |||||| | ||||| ||||||||||||| |||||||||||||| | |||||  |||||||||| |||    |||||||||||||||||  | ||| ||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacactta----caaaaagaaaaatttgggaaaaatatgaa 28801395  T
Q  207 aattcttacacgcaaatagg 226  Q
    |||||| |||||||||||||    
T  28801396 aattctcacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 36408564 - 36408718
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||    |||||||| ||| | |||| ||||||    
T  36408564 ggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaa----aaagaaaatttttggcaatttgaaaa 36408659  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||| |||||||||| |||||||||||| ||||||| || ||||||||||||    
T  36408660 ttcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 34136979 - 34136843
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  34136979 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 34136884  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacac 249  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  34136883 ttctcacacgcaaataggtctcgaaattttatttagcacac 34136843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 29728540 - 29728386
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| || |||| |||||||| |||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  29728540 ggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 29728445  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | ||||||||||||||||  |||||||||||||||||||| || ||| ||||||||    
T  29728444 ttgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 15838306 - 15838449
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| || |||||||||| ||||||| |  |||||||||||| |||||||||||||||||     ||||||||||||| ||||||||||||| | ||    
T  15838306 cgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-----aagaaaaatttgggcaatctgaaaattttcac 15838400  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    |||||||||||||| ||||||||||||||||||||| || ||| |||||    
T  15838401 acgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 16788179 - 16788025
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||||| ||||    
T  16788179 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatcttaaaa 16788084  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
     ||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  16788083 ctctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 3648947 - 3648794
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||| ||||| ||||||||||||    
T  3648947 gtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaattttgggcaatctgaaaat 3648852  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | | |||||||| ||||| | ||||||||||||||||||||| || ||| ||||||||    
T  3648851 tgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 9877242 - 9877387
Alignment:
Q  118 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 217  Q
    ||||| || |||||||||| ||||||||| | |||| ||||||  ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||     
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacat 9877337  T
Q  218 gcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  9877338 gcaaataggtctcgaaattttatttagcacactattgtcaaattcatctc 9877387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 4404021 - 4404157
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||   ||||||| | |||    ||||||||||||||||| |||||| ||||    
T  4404021 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatactta----caaaaagaaaaatttgggcaatctaaaaa 4404116  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacac 249  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4404117 ttctcacacgcaaataggtctcggaattttatttagcacac 4404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 23402121 - 23402259
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||| ||| || |||||| |||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  23402121 ggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 23402216  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  23402217 ttctcacacgcaaataggtctcgaaattttatttaacacacta 23402259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 267
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  128 ataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggt 227  Q
    ||||||||| ||||||| |||||||  |||||| |||||||||  ||||||    |||||||||||||| |||| |||||||||| | | ||||||||||    
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaa----aaagaaaaatttgggcaatttgaaaattctcatatgcaaataggt 42231064  T
Q  228 ctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| |||||||||||||||||||| || ||||||||||||    
T  42231065 ctcagaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 39914528 - 39914665
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||      |||| |||||||||| |||| ||||||    
T  39914528 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta-----taaaaaaaaaatttgggcaatttgaaaa 39914622  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||| | |||||||||| |||||||||||| ||||||||    
T  39914623 ttgtcacaagtaaataggtcttggaattttatttggcacacta 39914665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 2729343 - 2729196
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||||||||||| |||||| | |||||  |||||||||| |||     |||||||||  ||| | |||| |||||| ||| |     
T  2729343 cgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacactta----taaaaagaaattttttggcaatttgaaaactctcat 2729248  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||||  ||||||||||||||||||| ||  |||||||||||    
T  2729247 acgcaaataggtctcaaaattttatttagcacactattgatggattcatctc 2729196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 3435297 - 3435397
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttacacgcaa 221  Q
    ||||||||||||| ||||||||| |||||| ||||   |||||||||| |||    |||||||||||||||||  | |||||||||||||| | ||||||    
T  3435297 atcgataatttttgcacattagacccaacccaaaaacccattaacacactta----caaaaagaaaaatttgggcaaaatctgaaaattctcaaacgcaa 3435392  T
Q  222 atagg 226  Q
    |||||    
T  3435393 atagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 52945 - 53092
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| ||||||||||  |||| |||||   ||||||||||||||||    |||||||||||||||||||||||||||||| ||    
T  52945 cgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaa----aaagaaaaatttggacaatctgaaaattctcac 53040  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  53041 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 34389210 - 34389075
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| | ||||||||| ||||||    |||||||||||||| |||||||||||    
T  34389210 ggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 34389115  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcaca 248  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  34389114 ttctcacacgcaaataggtctcggaattttatttagcaca 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 38638372 - 38638237
Alignment:
Q  127 gataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaatagg 226  Q
    |||||||||| |||||||||||||||| ||||||  ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||||||||||||    
T  38638372 gataatttttgcacattagatccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacacgcaaatagg 38638277  T
Q  227 tctcggaattttatttagcacactagtgtcggattcatct 266  Q
    ||||||||||||||||||||||||| || ||| |||||||    
T  38638276 tctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 40920150 - 40920003
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| ||||||||||  |||| |||||   ||||||||||||||||    |||||||||||||||||||||||||||||| ||    
T  40920150 cgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaa----aaagaaaaatttggacaatctgaaaattctcac 40920055  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  40920054 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 35090181 - 35090335
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||||| |||||   ||||||||| ||||||    ||||||||||||||  ||||||||||    
T  35090181 ggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggtaatctgaaaa 35090276  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 36630829 - 36630983
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| ||||||| |  |||||||||||| |||||||||||||||||    |||||||||||||| |||||||||||    
T  36630829 ggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 36630924  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||||||||||||||| ||||||||| ||||||||||| || ||| ||||||||    
T  36630925 ttgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 14777261 - 14777123
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| ||||| ||||||||||||||||||    |||||||||||||| |||||||||||    
T  14777261 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 14777166  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  14777165 ttgtcacacgtaaataggtcttggaattttatttagcacacta 14777123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 26624775 - 26624913
Alignment:
Q  125 tcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaata 224  Q
    |||||||||||| || |||||| |||| | ||||||| ||||||||| ||||||    |||||||||||||| ||||||||||||||| |||||||||||    
T  26624775 tcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaattctcacacgcaaata 26624870  T
Q  225 ggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||||||||||||||||||||||||||| || ||| ||||||||    
T  26624871 ggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 37002298 - 37002144
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    ||||| |||| ||| ||||||||||||| ||||||||| |||| | ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  37002298 ggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 37002203  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  37002202 ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 3114250 - 3114099
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  3114250 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 3114155  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||| ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  3114154 ttgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 8394138 - 8394276
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| ||||||| |  |||||||||||| |||||||||||||||||    || ||||||||||| |||||||||||    
T  8394138 ggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa----aaggaaaaatttgggcaatctgaaaa 8394233  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  8394234 ttgtcacacgtaaataggtcttggaattttatttagcacacta 8394276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 8867885 - 8867733
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| || |||||| |||| | |||||   ||||| ||||||||||    |||||||||||||| ||||| |||||    
T  8867885 ggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaa----aaagaaaaatttgggcaatcggaaaa 8867790  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatc 265  Q
    || | |||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  8867789 ttttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 5555500 - 5555651
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  ||||||| |||||||||    |||||||||||||| |||||||||||    
T  5555500 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaa----aaagaaaaatttgggcaatctgaaaa 5555595  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||| ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  5555596 ttgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 43184622 - 43184468
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||||||||||| ||||||||||||||| ||| |||   |||| |||||   ||||||| | ||||||    |||||||||||||| |||||||||||    
T  43184622 ggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaa----aaagaaaaatttgggcaatctgaaaa 43184527  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  43184526 ttctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 33685578 - 33685715
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||||||||||| ||||||||||||| ||||||| | |||||| |||||  |||||||||| ||||||    |||||||||||||| ||||||||||||    
T  33685578 gtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 33685673  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    ||| | ||||||||| |||||  |||||||||||||||||||    
T  33685674 tctcatacgcaaatatgtctcataattttatttagcacacta 33685715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 36658209 - 36658348
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| |||||| || |||||| |||||   |||||||    ||| | |||||| |||||||||| ||||||||||||||| ||||||||||    
T  36658209 atcgataatttttgcacattggacccaaccgaaaagccaattaaca----tactaacaaaaataaaaatttgggcaatctgaaaattctcacacgcaaat 36658304  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||||||||||||||||||||||||| || ||| ||||||||    
T  36658305 aggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 7002805 - 7002892
Alignment:
Q  180 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||    
T  7002805 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 7048676 - 7048763
Alignment:
Q  180 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||    
T  7048676 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 45418596 - 45418750
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| | |||||||||||||| |||||   ||||||||| ||||||    |||||||||||||| |||||||||||    
T  45418596 ggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 45418691  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  45418692 ttctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 771012 - 771165
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| |||||||| |||| ||||||||| ||||||||||||  |||||||||| ||||||    |||||||||||||| |||||||||||    
T  771012 ggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 771107  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 266  Q
    |||| ||||||||||||||||||||| ||||||||||||| || || ||| |||||||    
T  771108 ttctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 44084756 - 44084603
Alignment:
Q  110 gtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaat 209  Q
    ||||| ||||||| ||||||||||||| ||||||| | |||| | ||||||||||||||||| ||||||    |||||||||||||| ||||||||||||    
T  44084756 gtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaa----aaagaaaaatttgggcaatctgaaaat 44084661  T
Q  210 tcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    ||| | ||||||||||||||| |||||||||||||||||||| || ||| ||||||||    
T  44084660 tctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 16405613 - 16405764
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||||||||||||||||| ||| |||||  ||||| ||||| |||||||||||||||     ||||||||||||||||||||||||||||    
T  16405613 ggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattta----taaaaagaaaaatttggacaatctgaaaa 16405708  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | ||||||||||| |||| ||||||||||||||||||||| || ||| |||||    
T  16405709 ttgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6403958 - 6403820
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||     |||||||||||||||| |||||||||||    
T  6403958 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta----taaaaagaaaaatttgggcaatctgaaaa 6403863  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  6403862 ttgtcacacgtaaataggtcttggaattttatttggcacacta 6403820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 42439999 - 42440150
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||   |||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  42439999 ggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 42440094  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||||||||||||||| | ||||||||||||||||||| || |||||||||    
T  42440095 ttgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcat 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 41251788 - 41251650
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  41251788 ggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 41251693  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  41251692 ttgtcacacgtaaataggtcttggaattttatttagcacacta 41251650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 35962735 - 35962879
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| |||||||||  ||||| ||||| | ||||||||||||||||    |||||||| ||||| ||||||||||||| | ||    
T  35962735 cgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaa----aaagaaaattttgggcaatctgaaaattgtcac 35962830  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || ||||||||||| ||||||||||||||||||||| || ||| |||||    
T  35962831 acacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 12756976 - 12756837
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| | ||||||| |||||| |||||   ||||||||| ||||||    |||||||||||||  ||||||||||||||| ||||||||||    
T  12756976 atcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa----aaagaaaaatttgagcaatctgaaaattctcacacgcaaat 12756881  T
Q  224 aggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | |||||||||||||||||||||||||| || ||| ||||||||    
T  12756880 aagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 8147364 - 8147518
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||| ||| ||||||||| |||||  ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  8147364 ggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 8147459  T
Q  209 -ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 266  Q
     |||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||||||    
T  8147460 attctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 2285890 - 2286013
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacacgcaaat 223  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||||||||||| |    || ||||||||||  ||||||||||||| | ||||||||||    
T  2285890 atcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacga----aaggaaaaatttgagcaatctgaaaattgtcacacgcaaat 2285985  T
Q  224 aggtctcggaattttatttagcacacta 251  Q
    |||| | |||||||||||||||||||||    
T  2285986 aggttttggaattttatttagcacacta 2286013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 8059478 - 8059351
Alignment:
Q  118 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttacac 217  Q
    ||||||||||||||||||| |||||||||  ||||| |||||   ||||||||| ||||||    |||||||||||||| |||| |||||||||| ||||    
T  8059478 ggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaa----aaagaaaaatttggccaatttgaaaattctcacac 8059383  T
Q  218 gcaaataggtctcggaattttatttagcacac 249  Q
     ||||| |||||||||||||||||||||||||    
T  8059382 acaaatcggtctcggaattttatttagcacac 8059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 32127295 - 32127144
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||| |  | ||| ||||| ||||||||||||||||||    |||||||||||| | |||||||||||    
T  32127295 ggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaa----aaagaaaaatttaggcaatctgaaaa 32127200  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||||||||||| ||| ||||||||||||||||||||| || ||| |||||    
T  32127199 ttgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 18981636 - 18981766
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| || |||||||||| |||||||||  ||||| |||||| |||||| ||||||||||    |||||||||||||| |||| | |||||| | ||    
T  18981636 cgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaa----aaagaaaaatttgggcaatttaaaaattgtcac 18981731  T
Q  216 acgcaaataggtctcggaattttatttagcacact 250  Q
    |||||||||||||| ||||||||||||||||||||    
T  18981732 acgcaaataggtcttggaattttatttagcacact 18981766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 31581776 - 31581622
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| | ||||| | ||||| ||||| || ||||||  || || |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  31581776 ggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 31581681  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  31581680 ttgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 17445193 - 17445057
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| || |||| ||||||||||||| |||  ||||  ||||| |||||  |||||||||||||||||    |||||||||||||| |||||||||||    
T  17445193 ggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaa 17445100  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||||||||||||    
T  17445099 ttgtcacacgtaaataggtcttggaattttatttagcacacta 17445057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 26162846 - 26162702
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    |||||||  |||||||||||||||||||| || ||||| ||||   |||||||||| ||||||    |||||||||||||| |||||| |||||||| |     
T  26162846 cgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaa----aaagaaaaatttgggcaatctaaaaattctcaa 26162751  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || |||||||||||||||   |||||||||||| || || ||| ||||||||    
T  26162750 acacaaataggtctcgga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 2958247 - 2958131
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||  |||||||||  ||||| |||||  |||||||||||||||||    | ||||||||||||  |||||||||||| | ||    
T  2958247 cgggctcgatcgataattttg-cacattagactcaacccaaaagcccattaacacatttacaa----agagaaaaatttgggtaatctgaaaattgtcac 2958153  T
Q  216 acgcaaataggtctcggaattt 237  Q
    |||||||||||||| |||||||    
T  2958152 acgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 4555350 - 4555250
Alignment:
Q  124 atcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttacacgcaa 221  Q
    ||||||||||||| ||||| | | |||||| ||||| || |||||||| |||    ||||||||||| |||||  | |||||||||||||| ||||| ||    
T  4555350 atcgataatttttgcacatcaaacccaacccaaaagctcgttaacacactta----caaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  222 atagg 226  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 3828997 - 3829150
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    ||||||||||| || ||||||||||||| ||||||| | |||||| ||||||||||||||||| |||    ||||||||||||||||| |||||||||||    
T  3828997 ggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacactta----caaaaagaaaaatttgggcaatctgaaaa 3829092  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | | |||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  3829093 ttttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 17445326 - 17445479
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||  ||| |||||||||  ||||||||||||||| ||||||  ||||||||| ||||||    |||||||||||||| |||||||||||    
T  17445326 ggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaa----aaagaaaaatttgggcaatctgaaaa 17445421  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatct 266  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||    
T  17445422 ttctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 32982210 - 32982056
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||| | ||||||||||||| ||||||||| |||||| |||||  |||||||| ||||||||    ||||||||||||||||||||||||||    
T  32982210 ggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaa----aaagaaaaatttggacaatctgaaaa 32982115  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    || | |||| ||||||||||| ||||||||||||||||| ||| || | ||||||||||    
T  32982114 ttgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 321524 - 321377
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| |||||||||||||   |||||||||||||| |||||| |||||||||| ||||||    |||||||||||||| ||||||||||||||| |     
T  321524 cgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaa----aaagaaaaatttgggcaatctgaaaattctcat 321429  T
Q  216 acgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    | |||||||||||||||||||||||||| |||| || || ||| ||||||||    
T  321428 atgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 26144268 - 26144406
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  26144268 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 26144363  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  26144364 ttgtcacacgtaaataggtcttggaattttatttggcacacta 26144406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 42311093 - 42310941
Alignment:
Q  111 tcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaatt 210  Q
    |||| ||||||| ||||||||||||| |||||||||  ||||| |||||  | |||||||||||||||    |||||||||||||| |||||||||||||    
T  42311093 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa----aaagaaaaatttgggcaatctgaaaatt 42310998  T
Q  211 cttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
     | ||||||||||| |||| | |||||||||||| || ||| || ||| ||||||||    
T  42310997 gtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 35907565 - 35907700
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||  ||||||||||||| ||||||||| |||||| |||||   ||||  ||| ||||||    |||||||| |||||  ||||||||||    
T  35907565 ggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaa----aaagaaaattttgggtaatctgaaaa 35907660  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcaca 248  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35907661 ttctcacacgcaaataggtctcggaattttatttagcaca 35907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 7433458 - 7433609
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| || |||| ||| ||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||| ||||| |||||| ||||    
T  7433458 ggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaattttgggcaatctaaaaa 7433553  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcat 264  Q
    || | |||| ||||||||||| | ||||||||||||||||||| || ||| |||||    
T  7433554 ttgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 41972420 - 41972314
Alignment:
Q  118 ggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttgg--acaatctgaaaattcttac 215  Q
    ||||| ||||||||||||| |||||||||||||||| |||||   ||||||||| |||    |||||||||||||||||  | |||||||||||||| ||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacactta----caaaaagaaaaatttggaaaaaatctgaaaattctcac 41972325  T
Q  216 acgcaaatagg 226  Q
    |||||||||||    
T  41972324 acgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 23313281 - 23313345
Alignment:
Q  138 cacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaa 206  Q
    |||||||||  ||||  |||||||||||||||||||||    ||||||||||||||||| |||||||||    
T  23313281 cacattagactcaacataaaagttcattaacacattta----caaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 535 - 673
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  535 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 630  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  631 ttgtcacacgtaaataggtcttggaattttatttggcacacta 673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 5243 - 5397
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||| ||||||||| ||||||||| |||| | |||||   ||||||||| ||||||    |||||||| ||||| |||||||||||    
T  5243 ggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaa----aaagaaaattttgggcaatctgaaaa 5338  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacactagtgtcggattcatctc 267  Q
    |||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  5339 ttctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 31493 - 31631
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||| |||| |||||| |||||  |||||||||| ||||||    ||||||||||||||||||||||||||    
T  31493 ggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaa----aaagaaaaatttggacaatctgaaaa 31588  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    |||| || ||||||||||||| | |||||||||| ||||||||    
T  31589 ttctcactcgcaaataggtctagtaattttattttgcacacta 31631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 480611 - 480473
Alignment:
Q  109 ggtcgctcgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaa 208  Q
    |||||| ||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||||||||     |||||||||||||||| |||| ||||||    
T  480611 ggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta----taaaaagaaaaatttgggcaatttgaaaa 480516  T
Q  209 ttcttacacgcaaataggtctcggaattttatttagcacacta 251  Q
    || | ||||| |||||||||| |||||||||||| ||||||||    
T  480515 ttgtcacacgtaaataggtcttggaattttatttggcacacta 480473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 17862 - 17993
Alignment:
Q  116 cgggctcaatcgataatttttacacattagatccaaccaaaaagttcattaacacatttacaagcaaaaagaaaaatttggacaatctgaaaattcttac 215  Q
    ||||||| ||||||||||||| |||||||||  ||||| |||||  |||||||||||||||||    |||||||||||||| ||||||||||||| | ||    
T  17862 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa----aaagaaaaatttgggcaatctgaaaattgtcac 17957  T
Q  216 acgcaaataggtctcggaattttatttagcacacta 251  Q
    | | |||||||||| | |||||||||||||||||||    
T  17958 atgtaaataggtcttgaaattttatttagcacacta 17993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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