View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219_low_1 (Length: 671)
Name: NF0219_low_1
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 24 - 671
Target Start/End: Complemental strand, 3088278 - 3087631
Alignment:
| Q |
24 |
catgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatgg |
123 |
Q |
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| T |
3088278 |
catgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaagg |
3088179 |
T |
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| Q |
124 |
cagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaataagagcacatgacaaaaataactacatatacaaa |
223 |
Q |
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| T |
3088178 |
cagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaatatgagcacatgacaaaaataactacatatacaaa |
3088079 |
T |
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| Q |
224 |
tagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgaagtggacttgtccatctatatttgtaccagtgcctaatttgat |
323 |
Q |
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| T |
3088078 |
tagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgtagtggacttgtccatctatatttgtaccagtgcctaatttgat |
3087979 |
T |
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| Q |
324 |
caggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatc |
423 |
Q |
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| T |
3087978 |
caggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatc |
3087879 |
T |
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| Q |
424 |
atatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattcataaccag |
523 |
Q |
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| T |
3087878 |
atatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattcataaccag |
3087779 |
T |
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| Q |
524 |
cttgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgtgatttgac |
623 |
Q |
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| T |
3087778 |
catgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgtgatttgac |
3087679 |
T |
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| Q |
624 |
tataaatagttatgtttcgctttggattttagaattgattttaggtta |
671 |
Q |
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| T |
3087678 |
tataaatagttatgtttcgctttggattttagaattgattttaggtta |
3087631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 591 - 671
Target Start/End: Complemental strand, 3087646 - 3087566
Alignment:
| Q |
591 |
aattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattttaggtta |
671 |
Q |
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| T |
3087646 |
aattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgcttttgattttagaattgattttaggtta |
3087566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 664
Target Start/End: Original strand, 34922119 - 34922185
Alignment:
| Q |
598 |
tttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattt |
664 |
Q |
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| T |
34922119 |
tttaggttagttaaacttgatttgactataaattgttatgtttggcttccgactttggaattgattt |
34922185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 613 - 645
Target Start/End: Original strand, 34898736 - 34898768
Alignment:
| Q |
613 |
cgtgatttgactataaatagttatgtttcgctt |
645 |
Q |
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| T |
34898736 |
cgtgatttgactataaattgttatgtttcgctt |
34898768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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