View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219_low_10 (Length: 270)

Name: NF0219_low_10
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219_low_10
NF0219_low_10
[»] chr4 (12 HSPs)
chr4 (29-260)||(36429270-36429501)
chr4 (29-260)||(36376225-36376456)
chr4 (29-260)||(36407115-36407346)
chr4 (29-260)||(36435723-36435954)
chr4 (29-260)||(36399658-36399889)
chr4 (29-260)||(36419277-36419508)
chr4 (29-200)||(36370513-36370684)
chr4 (29-260)||(36389469-36389701)
chr4 (29-185)||(36412313-36412469)
chr4 (202-260)||(36370433-36370491)
chr4 (74-118)||(40823841-40823885)
chr4 (75-119)||(48476691-48476735)
[»] chr2 (2 HSPs)
chr2 (76-194)||(2662470-2662588)
chr2 (76-120)||(2682025-2682069)
[»] chr8 (7 HSPs)
chr8 (94-161)||(15697353-15697420)
chr8 (77-158)||(15799843-15799924)
chr8 (94-166)||(15692677-15692749)
chr8 (77-161)||(15703715-15703799)
chr8 (77-157)||(15722546-15722626)
chr8 (94-158)||(15805392-15805456)
chr8 (154-224)||(23560564-23560634)
[»] chr3 (1 HSPs)
chr3 (29-119)||(13855176-13855266)
[»] scaffold0090 (1 HSPs)
scaffold0090 (82-119)||(8284-8321)
[»] chr1 (2 HSPs)
chr1 (82-119)||(47607375-47607412)
chr1 (76-116)||(47287663-47287703)
[»] chr7 (6 HSPs)
chr7 (74-118)||(20168090-20168134)
chr7 (74-118)||(20231557-20231601)
chr7 (74-118)||(20243622-20243666)
chr7 (74-118)||(20264016-20264060)
chr7 (74-118)||(20279525-20279569)
chr7 (82-118)||(20289266-20289302)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36429501 - 36429270
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429501 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 36429402  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429401 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 36429302  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    ||||||||||||||||||||||||||||||||    
T  36429301 aaacgctttacccaatccaatgacgacctttg 36429270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36376456 - 36376225
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376456 actatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 36376357  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376356 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 36376257  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    ||||||||| ||||||||||||| ||||||||    
T  36376256 aaacgctttccccaatccaatgatgacctttg 36376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36407346 - 36407115
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36407346 actatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcgtc 36407247  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  36407246 aaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatcccacaaatgatttca 36407147  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    ||||||||||||||||||||||| ||||||||    
T  36407146 aaacgctttacccaatccaatgatgacctttg 36407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36435954 - 36435723
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435954 actatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 36435855  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36435854 aaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataatttca 36435755  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    ||||||||  ||||||||||| | ||||||||    
T  36435754 aaacgcttaccccaatccaataatgacctttg 36435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36399889 - 36399658
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  36399889 actatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgagattttgggattcatttcagcatc 36399790  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  36399789 aaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatgccacaaataatttca 36399690  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    ||||||||  ||||||||||||| ||||||||    
T  36399689 aaacgcttaccccaatccaatgatgacctttg 36399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36419508 - 36419277
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36419508 actatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattacagcatc 36419409  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttca 228  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36419408 aaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagatataatacacctcgagcaatcccacaaataatttca 36419309  T
Q  229 aaacgctttacccaatccaatgacgacctttg 260  Q
    |||||| | |||||||||||||| ||||||||    
T  36419308 aaacgcgtaacccaatccaatgatgacctttg 36419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 36370684 - 36370513
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36370684 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatttcagcatc 36370585  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaac 200  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36370584 aaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaac 36370513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 36389701 - 36389469
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttc---tccaaatattctagccataccaaaatctgagattttgggattcattgcagc 125  Q
    |||||||||| ||||||||||||||| ||||||| |||||||| ||   |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  36389701 actatgttccaaccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccataccaaaatctgagattttagggttcattgcagc 36389602  T
Q  126 atcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatt 225  Q
     || |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||    
T  36389601 gtcaaggagaacattgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatcccac--ataatt 36389504  T
Q  226 tcaaaacgctttacccaatccaatgacgacctttg 260  Q
    |||||||| ||  ||||||||||||| ||||||||    
T  36389503 tcaaaacgtttgccccaatccaatgatgacctttg 36389469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 36412469 - 36412313
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatc 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36412469 actatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcgtc 36412370  T
Q  129 gaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttg 185  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36412369 aaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 36412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 36370491 - 36370433
Alignment:
Q  202 cctcgagcaatcccacaaataatttcaaaacgctttacccaatccaatgacgacctttg 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 36370433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 40823841 - 40823885
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  40823841 ctccaaagattctagccataccaaagtctgatatttttggattca 40823885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 48476691 - 48476735
Alignment:
Q  75 tccaaatattctagccataccaaaatctgagattttgggattcat 119  Q
    |||||| ||||||||||||||||||||||| || || ||||||||    
T  48476691 tccaaaaattctagccataccaaaatctgaaatcttaggattcat 48476735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 2662470 - 2662588
Alignment:
Q  76 ccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagcc 175  Q
    ||||| ||||| ||||| ||||| || || ||||| ||||||||| |  |||| |  ||||| ||||| |||||||||||||||||||||||| | || |    
T  2662470 ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc 2662569  T
Q  176 ttgaatcttgatgaagata 194  Q
    ||||||||  |||||||||    
T  2662570 ttgaatctctatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 2682025 - 2682069
Alignment:
Q  76 ccaaatattctagccataccaaaatctgagattttgggattcatt 120  Q
    ||||||||||||||||| ||||| ||||| ||||| |||||||||    
T  2682025 ccaaatattctagccatcccaaagtctgatatttttggattcatt 2682069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 15697353 - 15697420
Alignment:
Q  94 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatg 161  Q
    ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| |||||||||||    
T  15697353 ccaaaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 15799843 - 15799924
Alignment:
Q  77 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctct 158  Q
    ||||| |||| ||||  ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| ||||||||    
T  15799843 caaatgttcttgccaatccaaaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 15692677 - 15692749
Alignment:
Q  94 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaatta 166  Q
    ||||||||||| ||||||||||||||| ||  ||| |  ||||| ||||| ||||| ||||||||||||||||    
T  15692677 ccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 15703715 - 15703799
Alignment:
Q  77 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatg 161  Q
    ||||| |||| ||||  ||||||||||| ||||| ||||||||| || |||| || |||||||||| |||||| || ||||||||    
T  15703715 caaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatg 15703799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 15722546 - 15722626
Alignment:
Q  77 caaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctc 157  Q
    ||||| |||| |||| |||||||||||| ||||| ||||||||| ||   || || ||||||||||||||||| |||||||    
T  15722546 caaattttcttgccaaaccaaaatctgatatttttggattcatttcactgtccagaagaacgttgctggctttcagatctc 15722626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 15805392 - 15805456
Alignment:
Q  94 ccaaaatctgagattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctct 158  Q
    ||||||||||| ||||| ||||||||| || |||| || ||||| ||||||||||| ||||||||    
T  15805392 ccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 23560564 - 23560634
Alignment:
Q  154 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 224  Q
    ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  23560564 tctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 23560634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 13855266 - 13855176
Alignment:
Q  29 actatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcat 119  Q
    ||||||| ||||| | ||| ||||||||  | | ||||| |||  ||||| | ||||||||||||||||||||||| ||||||||||||||    
T  13855266 actatgtaccgactattctgtttgttctcccctcaatttgatcacctccacacattctagccataccaaaatctgaaattttgggattcat 13855176  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 8284 - 8321
Alignment:
Q  82 attctagccataccaaaatctgagattttgggattcat 119  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  8284 attctagccatgccaaaatctgaaattttgggattcat 8321  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 47607412 - 47607375
Alignment:
Q  82 attctagccataccaaaatctgagattttgggattcat 119  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  47607412 attctagccatgccaaaatctgagattttaggattcat 47607375  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 47287703 - 47287663
Alignment:
Q  76 ccaaatattctagccataccaaaatctgagattttgggatt 116  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  47287703 ccaaatattcttgccatcccaaaatctgaaattttgggatt 47287663  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 20168090 - 20168134
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20168090 ctccaaagattctagccataccaaattctgatatttttggattca 20168134  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 20231601 - 20231557
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20231601 ctccaaagattctagccataccaaagtctgatatttttggattca 20231557  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 20243666 - 20243622
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||||    
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattca 20243622  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 20264060 - 20264016
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20264060 ctccaaagattctagccataccaaagtctgatatttttggattca 20264016  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 20279569 - 20279525
Alignment:
Q  74 ctccaaatattctagccataccaaaatctgagattttgggattca 118  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  20279569 ctccaaagattctagccataccaaagtctgatatttttggattca 20279525  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 20289302 - 20289266
Alignment:
Q  82 attctagccataccaaaatctgagattttgggattca 118  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  20289302 attctagccataccaaagtctgatattttgggattca 20289266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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