View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219_low_12 (Length: 259)
Name: NF0219_low_12
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_low_12 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 259
Target Start/End: Original strand, 27065778 - 27066003
Alignment:
| Q |
34 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
133 |
Q |
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| T |
27065778 |
catcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacga |
27065877 |
T |
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| Q |
134 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
233 |
Q |
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| T |
27065878 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaa |
27065977 |
T |
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| Q |
234 |
ccatgttttttgccaaactaccacta |
259 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27065978 |
ccatgttttttgccaaactaccacta |
27066003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 258
Target Start/End: Original strand, 27079507 - 27079719
Alignment:
| Q |
46 |
catcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgac |
145 |
Q |
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| T |
27079507 |
catcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtggtaaaaacgac |
27079606 |
T |
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| Q |
146 |
cttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttg |
245 |
Q |
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| T |
27079607 |
cttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttg |
27079706 |
T |
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| Q |
246 |
ccaaactaccact |
258 |
Q |
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|||||||| |||| |
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| T |
27079707 |
ccaaactaacact |
27079719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 27053355 - 27053538
Alignment:
| Q |
53 |
gaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgaccttggcg |
152 |
Q |
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||||| || |||||||| ||||| |||||||| | ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||| || | |
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| T |
27053355 |
gaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtg |
27053454 |
T |
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| Q |
153 |
gtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
236 |
Q |
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|||| ||||||||| ||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||| ||||| |
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| T |
27053455 |
gtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 14866157 - 14866036
Alignment:
| Q |
137 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
236 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |
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| T |
14866157 |
aaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaaccc |
14866058 |
T |
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| Q |
237 |
tgttttttgccaaactaccact |
258 |
Q |
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|||||| ||||||||||||| |
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| T |
14866057 |
atttttttaccaaactaccact |
14866036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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