View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0219_low_6 (Length: 385)

Name: NF0219_low_6
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0219_low_6
NF0219_low_6
[»] chr1 (12 HSPs)
chr1 (53-356)||(15999845-16000148)
chr1 (17-53)||(1961637-1961673)
chr1 (17-53)||(2336087-2336123)
chr1 (17-53)||(19367474-19367510)
chr1 (17-52)||(16884518-16884553)
chr1 (17-52)||(22116381-22116416)
chr1 (17-52)||(35070035-35070070)
chr1 (17-52)||(20429353-20429388)
chr1 (17-52)||(22840179-22840214)
chr1 (19-52)||(18098375-18098408)
chr1 (17-53)||(5624232-5624268)
chr1 (17-53)||(22570924-22570960)
[»] chr5 (20 HSPs)
chr5 (53-356)||(6838661-6838964)
chr5 (2-53)||(20639878-20639929)
chr5 (3-53)||(25526187-25526237)
chr5 (17-53)||(20092783-20092819)
chr5 (2-50)||(26186664-26186712)
chr5 (2-53)||(25532867-25532918)
chr5 (17-52)||(36448249-36448284)
chr5 (19-52)||(20099682-20099715)
chr5 (17-53)||(21696071-21696107)
chr5 (17-53)||(26553296-26553332)
chr5 (17-53)||(29901228-29901264)
chr5 (17-52)||(21688153-21688188)
chr5 (17-52)||(23378331-23378366)
chr5 (24-53)||(36454626-36454655)
chr5 (17-53)||(7794287-7794323)
chr5 (17-53)||(12387282-12387318)
chr5 (17-53)||(15779774-15779810)
chr5 (17-53)||(17961873-17961909)
chr5 (21-53)||(23577474-23577506)
chr5 (17-53)||(31525329-31525365)
[»] chr4 (13 HSPs)
chr4 (130-339)||(7285281-7285480)
chr4 (2-53)||(3382460-3382511)
chr4 (2-52)||(39745436-39745486)
chr4 (3-52)||(3389209-3389258)
chr4 (17-52)||(19738039-19738074)
chr4 (17-52)||(20548381-20548416)
chr4 (17-52)||(20555005-20555040)
chr4 (17-52)||(22175868-22175903)
chr4 (17-52)||(50187783-50187818)
chr4 (17-53)||(13100669-13100705)
chr4 (17-53)||(15880075-15880111)
chr4 (17-52)||(55793259-55793294)
chr4 (17-53)||(16720806-16720842)
[»] chr6 (26 HSPs)
chr6 (154-337)||(13307531-13307714)
chr6 (154-337)||(14596162-14596345)
chr6 (2-53)||(19719835-19719886)
chr6 (2-52)||(19713680-19713730)
chr6 (17-53)||(18961027-18961063)
chr6 (17-52)||(12667568-12667603)
chr6 (17-52)||(26896467-26896502)
chr6 (17-52)||(28702918-28702953)
chr6 (17-53)||(19169105-19169141)
chr6 (18-54)||(19898948-19898984)
chr6 (17-53)||(20452688-20452724)
chr6 (17-53)||(24143596-24143632)
chr6 (17-52)||(20058868-20058903)
chr6 (21-52)||(20459493-20459524)
chr6 (17-52)||(22779170-22779205)
chr6 (17-52)||(24150086-24150121)
chr6 (19-53)||(1549202-1549236)
chr6 (2-44)||(14176931-14176973)
chr6 (2-52)||(17784086-17784136)
chr6 (19-52)||(15666297-15666330)
chr6 (17-53)||(16816887-16816923)
chr6 (17-53)||(16825642-16825678)
chr6 (17-53)||(20051005-20051041)
chr6 (20-52)||(21750688-21750720)
chr6 (17-53)||(22631693-22631729)
chr6 (17-53)||(27517309-27517345)
[»] chr7 (15 HSPs)
chr7 (80-337)||(21282696-21282954)
chr7 (2-52)||(1858582-1858632)
chr7 (17-53)||(34132852-34132888)
chr7 (17-55)||(15683149-15683187)
chr7 (2-52)||(18779080-18779130)
chr7 (17-50)||(43906101-43906134)
chr7 (17-53)||(42631289-42631325)
chr7 (17-52)||(22346867-22346902)
chr7 (3-53)||(13270903-13270953)
chr7 (19-53)||(15767139-15767173)
chr7 (2-52)||(28415150-28415200)
chr7 (21-54)||(17016388-17016421)
chr7 (17-53)||(4847169-4847205)
chr7 (17-53)||(9474234-9474270)
chr7 (17-53)||(34363171-34363207)
[»] scaffold0150 (1 HSPs)
scaffold0150 (2-52)||(38614-38664)
[»] scaffold0050 (1 HSPs)
scaffold0050 (2-52)||(27731-27781)
[»] chr2 (10 HSPs)
chr2 (2-52)||(36735333-36735383)
chr2 (2-52)||(38084483-38084533)
chr2 (17-52)||(18319-18354)
chr2 (2-53)||(5871126-5871177)
chr2 (17-52)||(20279362-20279397)
chr2 (17-53)||(18500225-18500261)
chr2 (17-52)||(11873682-11873717)
chr2 (17-52)||(22518993-22519028)
chr2 (2-52)||(5874267-5874317)
chr2 (17-53)||(21064685-21064721)
[»] scaffold0029 (2 HSPs)
scaffold0029 (17-53)||(38103-38139)
scaffold0029 (17-53)||(33952-33988)
[»] chr3 (30 HSPs)
chr3 (17-53)||(4313625-4313661)
chr3 (17-52)||(261364-261399)
chr3 (17-52)||(13111817-13111852)
chr3 (17-52)||(14893176-14893211)
chr3 (17-52)||(16031289-16031324)
chr3 (17-52)||(21638591-21638626)
chr3 (2-52)||(11180760-11180810)
chr3 (2-51)||(12550412-12550461)
chr3 (20-53)||(14881348-14881381)
chr3 (19-52)||(23288154-23288187)
chr3 (17-53)||(13105669-13105705)
chr3 (16-52)||(33814597-33814633)
chr3 (18-53)||(74237-74272)
chr3 (17-52)||(3404752-3404787)
chr3 (2-53)||(8612621-8612672)
chr3 (17-52)||(14888071-14888106)
chr3 (17-52)||(15610519-15610554)
chr3 (17-52)||(18706267-18706302)
chr3 (6-53)||(30102471-30102518)
chr3 (19-50)||(37470141-37470172)
chr3 (17-52)||(48060760-48060795)
chr3 (17-52)||(49967354-49967389)
chr3 (18-52)||(68145-68179)
chr3 (2-52)||(8606162-8606212)
chr3 (19-52)||(13086554-13086587)
chr3 (17-53)||(5651854-5651890)
chr3 (17-53)||(8812602-8812638)
chr3 (17-53)||(15529072-15529108)
chr3 (17-53)||(15579469-15579505)
chr3 (17-53)||(46385298-46385334)
[»] scaffold0290 (1 HSPs)
scaffold0290 (17-52)||(22046-22081)
[»] scaffold0167 (1 HSPs)
scaffold0167 (17-52)||(7980-8015)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-52)||(23583-23618)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-52)||(96782-96817)
[»] chr8 (10 HSPs)
chr8 (17-52)||(14891892-14891927)
chr8 (17-52)||(15061366-15061401)
chr8 (18-52)||(25859306-25859340)
chr8 (3-52)||(32025670-32025719)
chr8 (21-53)||(20733159-20733191)
chr8 (17-52)||(22163017-22163052)
chr8 (17-52)||(24487946-24487981)
chr8 (17-52)||(45469474-45469509)
chr8 (19-53)||(22157010-22157044)
chr8 (17-54)||(6030846-6030883)
[»] scaffold0253 (2 HSPs)
scaffold0253 (2-52)||(10339-10389)
scaffold0253 (2-52)||(19764-19814)
[»] scaffold0046 (1 HSPs)
scaffold0046 (2-52)||(86712-86762)
[»] scaffold0085 (1 HSPs)
scaffold0085 (19-52)||(7831-7864)
[»] scaffold0039 (1 HSPs)
scaffold0039 (17-50)||(89904-89937)
[»] scaffold0028 (1 HSPs)
scaffold0028 (19-52)||(65838-65871)
[»] scaffold0755 (1 HSPs)
scaffold0755 (17-53)||(962-998)
[»] scaffold0378 (3 HSPs)
scaffold0378 (17-53)||(769-805)
scaffold0378 (17-52)||(3336-3371)
scaffold0378 (17-52)||(15816-15851)
[»] scaffold0094 (2 HSPs)
scaffold0094 (17-53)||(30730-30766)
scaffold0094 (19-53)||(41697-41731)
[»] scaffold0068 (2 HSPs)
scaffold0068 (17-53)||(17803-17839)
scaffold0068 (17-52)||(25722-25757)
[»] scaffold1922 (1 HSPs)
scaffold1922 (17-52)||(246-281)
[»] scaffold0473 (1 HSPs)
scaffold0473 (17-52)||(9193-9228)
[»] scaffold0441 (1 HSPs)
scaffold0441 (17-52)||(2471-2506)
[»] scaffold0351 (1 HSPs)
scaffold0351 (17-52)||(7671-7706)
[»] scaffold0328 (1 HSPs)
scaffold0328 (17-52)||(207-242)
[»] scaffold0320 (1 HSPs)
scaffold0320 (17-52)||(6351-6386)
[»] scaffold0101 (1 HSPs)
scaffold0101 (17-52)||(16568-16603)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-52)||(14099-14134)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-53)||(3765-3799)
[»] scaffold0630 (1 HSPs)
scaffold0630 (2-43)||(1393-1434)
[»] scaffold0505 (1 HSPs)
scaffold0505 (19-52)||(11470-11503)
[»] scaffold1719 (1 HSPs)
scaffold1719 (17-53)||(21-57)
[»] scaffold0605 (1 HSPs)
scaffold0605 (17-53)||(9368-9404)
[»] scaffold0503 (2 HSPs)
scaffold0503 (17-53)||(1947-1983)
scaffold0503 (17-53)||(6514-6550)
[»] scaffold0183 (1 HSPs)
scaffold0183 (20-52)||(20679-20711)
[»] scaffold0132 (1 HSPs)
scaffold0132 (27-55)||(24298-24326)
[»] scaffold0104 (1 HSPs)
scaffold0104 (17-53)||(38569-38605)
[»] scaffold0032 (1 HSPs)
scaffold0032 (17-53)||(29143-29179)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 53 - 356
Target Start/End: Original strand, 15999845 - 16000148
Alignment:
Q  53 gggtataaggaatgtgtccacgatcaccgtggacaacgcttcctctaatgatgtggctgttggttatttgnnnnnnngacttaagatcaagaatgagttg 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||       |||||||||||||||||| ||||    
T  15999845 gggtataaggaatgtgtccacgatcaccgtggacaacgcttcctctaatgatgtaactgttggttatttgaaaaaaagacttaagatcaagaatgggttg 15999944  T
Q  153 ttgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatctatctattgctagca 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  15999945 ttgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatatgtctattgctagca 16000044  T
Q  253 tccgcaatgcggttaggtttgtgaggttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaaggataacatgtaagaaacatgtttg 352  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  16000045 tccgcaatgcggttaggtttgtgaggtcttcacctcaaagagctttgaaatttcaagaatacattgatatgtcaaggataacatgtaaaaaacatgtttg 16000144  T
Q  353 tctt 356  Q
    ||||    
T  16000145 tctt 16000148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 1961673 - 1961637
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  1961673 tcagtggggccttaggtcaaaaattggggtatgacag 1961637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 2336087 - 2336123
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  2336087 tcagtggggccttaggtcaaaaattggggtatgacag 2336123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 19367510 - 19367474
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  19367510 tcagtggggccttaggtcaaaaattggggtatgacag 19367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 16884553 - 16884518
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  16884553 tcagtggggccttaggtcaaaaattggggtatgaca 16884518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22116381 - 22116416
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  22116381 tcagtggggccttaggtcaaaaattggggtatgaca 22116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 35070070 - 35070035
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  35070070 tcagtggggccttaggtcaaaaattggggtatgaca 35070035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 20429388 - 20429353
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  20429388 tcagtgggaccttaggtcaaaaattggggtatgaca 20429353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22840179 - 22840214
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  22840179 tcagtgggaccttaggtcaaaaattggggtatgaca 22840214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 18098408 - 18098375
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||| ||||||||||||||||||    
T  18098408 agtggggccttaggttaaaaattggggtatgaca 18098375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 5624232 - 5624268
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  5624232 tcagtgggaccttaggtcaaaatttggggtatgacag 5624268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 22570924 - 22570960
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  22570924 tcagtgggaccttaggtcaaaatttggggtatgacag 22570960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 53 - 356
Target Start/End: Complemental strand, 6838964 - 6838661
Alignment:
Q  53 gggtataaggaatgtgtccacgatcaccgtggacaacgcttcctctaatgatgtggctgttggttatttgnnnnnnngacttaagatcaagaatgagttg 152  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||| ||||    
T  6838964 gggtataagaaatgtgtccacgatcaccgttgacaacgcttcctctaatgatgtggctgttagttatttgaaacaaagacttaagatcaagaatgggttg 6838865  T
Q  153 ttgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatctatctattgctagca 252  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  6838864 ttgggtgaaggagatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatttgtctatttctagca 6838765  T
Q  253 tccgcaatgcggttaggtttgtgaggttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaaggataacatgtaagaaacatgtttg 352  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6838764 tccgcaatgcggttaggtttgtgaggtcttcacctcaaagagctttgaaatttaaagaatgcattgatatgtcaaggataacatgtaaaaaacatgtttg 6838665  T
Q  353 tctt 356  Q
    ||||    
T  6838664 tctt 6838661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 20639878 - 20639929
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  20639878 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 20639929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 25526237 - 25526187
Alignment:
Q  3 tcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  25526237 tcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 25526187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 20092783 - 20092819
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  20092783 tcagtggggccttaggtcaaaaattggggtatgacag 20092819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26186664 - 26186712
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatga 50  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  26186664 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatga 26186712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 25532918 - 25532867
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  |||||||||||||||||||||||||||| ||||||||    
T  25532918 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacag 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 36448284 - 36448249
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  36448284 tcagtggggccttaggtcaaaaattggggtatgaca 36448249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 20099682 - 20099715
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  20099682 agtggggccttaggtcaaaaattggggtatgaca 20099715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 21696107 - 21696071
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21696107 tcagtgggaccttaggtcaaaaattggggtatgacag 21696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 26553296 - 26553332
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26553296 tcagtgggaccttaggtcaaaaattggggtatgacag 26553332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 29901264 - 29901228
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29901264 tcagtgggaccttaggtcaaaaattggggtatgacag 29901228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 21688188 - 21688153
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  21688188 tcagtgggaccttaggtcaaaaattggggtatgaca 21688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 23378331 - 23378366
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||||||||||||||||||| |||||||||    
T  23378331 tcagtggggccttaggtcaaaaattgaggtatgaca 23378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 36454655 - 36454626
Alignment:
Q  24 ggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||||||||||||||||||||||||    
T  36454655 ggccttaggtcaaaaattggggtatgacag 36454626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 7794323 - 7794287
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  7794323 tcagtgggaccttaggtcaaaatttggggtatgacag 7794287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 12387282 - 12387318
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  12387282 tcagtgggaccttaggtcaaaatttggggtatgacag 12387318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15779774 - 15779810
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  15779774 tcagtgggaccttaggtcaaaatttggggtatgacag 15779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 17961909 - 17961873
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  17961909 tcagtgggaccttaggtcaaaatttggggtatgacag 17961873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 23577474 - 23577506
Alignment:
Q  21 tggggccttaggtcaaaaattggggtatgacag 53  Q
    |||| ||||||||||||||||||||||||||||    
T  23577474 tgggaccttaggtcaaaaattggggtatgacag 23577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 31525365 - 31525329
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  31525365 tcagtgggaccttaggtcaaaatttggggtatgacag 31525329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 130 - 339
Target Start/End: Original strand, 7285281 - 7285480
Alignment:
Q  130 gacttaagatcaagaatgagttgttgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaaga 229  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  7285281 gacttaagatcaagaatgggttgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcatggacgggttgaaaga 7285380  T
Q  230 tcaagatctatctattgctagcatccgcaatgcggttaggtttgtgaggttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaagg 329  Q
    |||||||          |||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||||||||||||  | |||||||||    
T  7285381 tcaagat----------ctagcatccgcaatgcagttaggtttgtgaggtcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaagg 7285470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3382460 - 3382511
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3382460 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 3382511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 39745436 - 39745486
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  39745436 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 39745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 3389209 - 3389258
Alignment:
Q  3 tcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  3389209 tcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3389258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 19738039 - 19738074
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  19738039 tcagtggggccttaggtcaaaaattggggtatgaca 19738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 20548416 - 20548381
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  20548416 tcagtggggccttaggtcaaaaattggggtatgaca 20548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 20555040 - 20555005
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  20555040 tcagtggggccttaggtcaaaaattggggtatgaca 20555005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22175868 - 22175903
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  22175868 tcagtggggccttaggtcaaaaattggggtatgaca 22175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 50187818 - 50187783
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  50187818 tcagtggggccttaggtcaaaaattggggtatgaca 50187783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 13100705 - 13100669
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||| ||||||||||||||    
T  13100705 tcagtggggccttaggtcaaaatttggggtatgacag 13100669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15880075 - 15880111
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15880075 tcagtgggaccttaggtcaaaaattggggtatgacag 15880111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 55793259 - 55793294
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  55793259 tcagtgggaccttaggtcaaaaattggggtatgaca 55793294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 16720806 - 16720842
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  16720806 tcagtcgggtcttaggtcaaaaattggggtatgacag 16720842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 337
Target Start/End: Original strand, 13307531 - 13307714
Alignment:
Q  154 tgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatctatctattgctagcat 253  Q
    ||||||||||||||||||| |||||||||||||| || || ||||||||||| || || |||||||| || || ||||||||| | |||||| |||||||    
T  13307531 tgggtgaaggggatcacttgcatatgaggtgtgtagcacacatattgaacttggttgtaatggacggcttaaaggatcaagatttgtctatttctagcat 13307630  T
Q  254 ccgcaatgcggttaggtttgtgaggttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaaggataacatg 337  Q
    ||||||||| ||||||||||| || | |||||| || |||||||  ||||| ||||||||||| || |||||||||||||||||    
T  13307631 ccgcaatgctgttaggtttgttagatcttcaccacaaagagcttcaaaattcaaagaatgcatagaaatgtcaaggataacatg 13307714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 337
Target Start/End: Complemental strand, 14596345 - 14596162
Alignment:
Q  154 tgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatctatctattgctagcat 253  Q
    |||||||||||| |||||| |||||||||||||| || || ||||||||||| |||||  ||||||| || || ||||||||| | ||||||  ||||||    
T  14596345 tgggtgaagggggtcacttgcatatgaggtgtgtagcacacatattgaacttggtagtactggacggcttaaaggatcaagatttgtctatttttagcat 14596246  T
Q  254 ccgcaatgcggttaggtttgtgaggttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaaggataacatg 337  Q
    ||||||||| ||||||||||| || | |||||| || ||||| |  ||||| ||||||||||| || |||||||||||| ||||    
T  14596245 ccgcaatgctgttaggtttgttagatcttcaccacaaagagcatcaaaattcaaagaatgcatagaaatgtcaaggatagcatg 14596162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 19719886 - 19719835
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  19719886 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 19719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 19713730 - 19713680
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  19713730 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19713680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 18961027 - 18961063
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  18961027 tcagtggggccttaggtcaaaaattggggtatgacag 18961063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 12667568 - 12667603
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  12667568 tcagtggggccttaggtcaaaaattggggtatgaca 12667603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26896502 - 26896467
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  26896502 tcagtggggccttaggtcaaaaattggggtatgaca 26896467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 28702918 - 28702953
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  28702918 tcagtggggccttaggtcaaaaattggggtatgaca 28702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 19169141 - 19169105
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  19169141 tcagtgggaccttaggtcaaaaattggggtatgacag 19169105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 19898984 - 19898948
Alignment:
Q  18 cagtggggccttaggtcaaaaattggggtatgacagg 54  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19898984 cagtggggccttaggtcaaaaatttgggtatgacagg 19898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 20452688 - 20452724
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||| |||||||||||||||||||||||||||||    
T  20452688 tcagtggagccttaggtcaaaaattggggtatgacag 20452724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 24143596 - 24143632
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  24143596 tcagtgggaccttaggtcaaaaattggggtatgacag 24143632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20058868 - 20058903
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  20058868 tcagtgggaccttaggtcaaaaattggggtatgaca 20058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 20459493 - 20459524
Alignment:
Q  21 tggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||    
T  20459493 tggggccttaggtcaaaaattggggtatgaca 20459524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22779170 - 22779205
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||| |||||||||||||||||||||||||    
T  22779170 tcagtggggcattaggtcaaaaattggggtatgaca 22779205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24150086 - 24150121
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  24150086 tcagtgggaccttaggtcaaaaattggggtatgaca 24150121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 1549236 - 1549202
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  1549236 agtgggaccttaggtcaaaaattggggtatgacag 1549202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 14176973 - 14176931
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggg 44  Q
    ||||||||| |||  ||||||||||||||||||||||||||||    
T  14176973 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggg 14176931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 17784086 - 17784136
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||| ||||||||||||||||||| ||||||||    
T  17784086 gtcgagtgacatgtgtcagtggagccttaggtcaaaaattggtgtatgaca 17784136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 15666297 - 15666330
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||    
T  15666297 agtgggcccttaggtcaaaaattggggtatgaca 15666330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 16816887 - 16816923
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  16816887 tcagtgggaccttaggtcaaaatttggggtatgacag 16816923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 16825642 - 16825678
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  16825642 tcagtgggaccttaggtcaaaatttggggtatgacag 16825678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 20051005 - 20051041
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||  |||||||||||||||||||||||||||    
T  20051005 tcagtgggaacttaggtcaaaaattggggtatgacag 20051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 21750688 - 21750720
Alignment:
Q  20 gtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| ||||||||||||||||||||||||||    
T  21750688 gtggggtcttaggtcaaaaattggggtatgaca 21750720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 22631729 - 22631693
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| | ||||||||||||||||||||||||||||    
T  22631729 tcagtgtgaccttaggtcaaaaattggggtatgacag 22631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27517345 - 27517309
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  27517345 tcagtgggaccttaggtcaaaatttggggtatgacag 27517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 337
Target Start/End: Complemental strand, 21282954 - 21282696
Alignment:
Q  80 cgtggacaacgcttcctctaatgatgtggctgttggttatttgnnnnnnngacttaagatcaagaatgagttgttgggtgaaggggatcacttccatatg 179  Q
    ||||||||||||||| || |||||||||| |||   ||||||        ||||||||| |||||||  |||  |||||||||  |||||||| ||||||    
T  21282954 cgtggacaacgcttcttcgaatgatgtggttgtctcttatttaaaaagaagacttaagaacaagaattggttaatgggtgaagatgatcactttcatatg 21282855  T
Q  180 aggtgtgttgcccatatattgaacttagtagtcatggacgggttgaaagatcaagatctatctattgctagcatccgc-aatgcggttaggtttgtgagg 278  Q
    |||||||| ||  | ||||||||||| ||||| |||| ||  || || ||||||||| | |||||| ||||||| ||| ||||   |||||||||| ||     
T  21282854 aggtgtgtggcatacatattgaacttggtagtaatgggcgacttaaatgatcaagatttgtctatttctagcattcgcaaatgtttttaggtttgttaga 21282755  T
Q  279 ttttcacctcagagagctttgaaatttaaagaatgcattgatatgtcaaggataacatg 337  Q
    |||||||| |  ||||| || ||||| ||||||||||| || || ||||||||||||||    
T  21282754 ttttcaccacgaagagcattaaaattcaaagaatgcatagaaatctcaaggataacatg 21282696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 1858582 - 1858632
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  1858582 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 1858632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34132852 - 34132888
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  34132852 tcagtggggccttaggtcaaaaattggggtatgacag 34132888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 15683187 - 15683149
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacaggg 55  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  15683187 tcagtgggaccttaggtcaaaaattggggtatgacaggg 15683149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 18779080 - 18779130
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  |||| |||||||||||||||||||||||||||||||    
T  18779080 gtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 18779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 43906134 - 43906101
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatga 50  Q
    ||||||||||||||||||||||||||||||||||    
T  43906134 tcagtggggccttaggtcaaaaattggggtatga 43906101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 42631289 - 42631325
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42631289 tcagtgggaccttaggtcaaaaattggggtatgacag 42631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 22346902 - 22346867
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||||||||| |||||||||||||||||||    
T  22346902 tcagtggggccttaggacaaaaattggggtatgaca 22346867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 13270903 - 13270953
Alignment:
Q  3 tcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||  |||||||||||||||||||||||||||  ||||||||    
T  13270903 tcgagtgacatgtgtcagtggggccttaggtcaaaaattggaatatgacag 13270953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 15767139 - 15767173
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  15767139 agtgggaccttaggtcaaaaattggggtatgacag 15767173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 28415200 - 28415150
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  |||| |||||||||||| ||||||||||||||||||    
T  28415200 gtcgagtgacatgtgtcagcggggccttaggtaaaaaattggggtatgaca 28415150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 17016388 - 17016421
Alignment:
Q  21 tggggccttaggtcaaaaattggggtatgacagg 54  Q
    |||| |||||||||||||||||||||||||||||    
T  17016388 tgggaccttaggtcaaaaattggggtatgacagg 17016421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4847205 - 4847169
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  4847205 tcagtgggaccttaggtcaaaatttggggtatgacag 4847169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 9474270 - 9474234
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  9474270 tcagtggagccttaggtcaaaatttggggtatgacag 9474234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34363171 - 34363207
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  34363171 tcagtggggtcttgggtcaaaaattggggtatgacag 34363207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 38614 - 38664
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  38614 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 38664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 27731 - 27781
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  27731 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 27781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 36735383 - 36735333
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36735383 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 36735333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 38084483 - 38084533
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  38084483 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 38084533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 18319 - 18354
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  18319 tcagtggggccttaggtcaaaaattggggtatgaca 18354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 5871126 - 5871177
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  5871126 gtcgagtgatatgtgtcagtgggcccttaggtcaaaaattggggtatgacag 5871177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20279362 - 20279397
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  20279362 tcagtggggccttaggtcaaaaattggggtatgaca 20279397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 18500261 - 18500225
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18500261 tcagtggggccttagatcaaaaattggggtatgacag 18500225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 11873717 - 11873682
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11873717 tcagtggggtcttaggtcaaaaattggggtatgaca 11873682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22518993 - 22519028
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  22518993 tcagtgggaccttaggtcaaaaattggggtatgaca 22519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 5874267 - 5874317
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  |||||||  |||||||||||||||||||||||||||    
T  5874267 gtcgagtgacatgtgtcagtggacccttaggtcaaaaattggggtatgaca 5874317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 21064721 - 21064685
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||||||| |||||||||||||||||||    
T  21064721 tcagtgggaccttaggtaaaaaattggggtatgacag 21064685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 38103 - 38139
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  38103 tcagtggggccttaggtcaaaaattggggtatgacag 38139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 33988 - 33952
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33988 tcagtgggaccttaggtcaaaatttggggtatgacag 33952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 4313625 - 4313661
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  4313625 tcagtggggccttaggtcaaaaattggggtatgacag 4313661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 261399 - 261364
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  261399 tcagtggggccttaggtcaaaaattggggtatgaca 261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 13111817 - 13111852
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  13111817 tcagtggggccttaggtcaaaaattggggtatgaca 13111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 14893176 - 14893211
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  14893176 tcagtggggccttaggtcaaaaattggggtatgaca 14893211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 16031289 - 16031324
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  16031289 tcagtggggccttaggtcaaaaattggggtatgaca 16031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 21638591 - 21638626
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  21638591 tcagtggggccttaggtcaaaaattggggtatgaca 21638626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 11180810 - 11180760
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||| ||||||||||||||||||    
T  11180810 gtcgagtgacatgtgtcagtggggccttaggttaaaaattggggtatgaca 11180760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 12550461 - 12550412
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgac 51  Q
    ||||||||| |||  ||| |||||||||||||||||||||||||||||||    
T  12550461 gtcgagtgacatgtgtcactggggccttaggtcaaaaattggggtatgac 12550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 14881348 - 14881381
Alignment:
Q  20 gtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||||||||||||||||||||||||||||    
T  14881348 gtggggccttaggtcaaaaattggggtatgacag 14881381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 23288154 - 23288187
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  23288154 agtggggccttaggtcaaaaattggggtatgaca 23288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 13105669 - 13105705
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13105669 tcagtggggccttaggtcaaaaattagggtatgacag 13105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 33814597 - 33814633
Alignment:
Q  16 atcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||||||||||||||||||||||||||    
T  33814597 atcagtgggaccttaggtcaaaaattggggtatgaca 33814633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 74272 - 74237
Alignment:
Q  18 cagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  74272 cagtggggcgttaggtcaaaaattggggtatgacag 74237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 3404787 - 3404752
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3404787 tcagtggggccttaggtaaaaaattggggtatgaca 3404752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 8612672 - 8612621
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||| |||  ||||||||  |||||||||||||||||||||||||||    
T  8612672 gtcgagtgacatgtctcagtgggctcttaggtcaaaaattggggtatgacag 8612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 14888071 - 14888106
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14888071 tcagtggagccttaggtcaaaaattggggtatgaca 14888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 15610519 - 15610554
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  15610519 tcagtgggaccttaggtcaaaaattggggtatgaca 15610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 18706302 - 18706267
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  18706302 tcagtgggaccttaggtcaaaaattggggtatgaca 18706267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 30102471 - 30102518
Alignment:
Q  6 agtgagatgaatcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||| ||| ||||||||||||||| ||||||||||||| ||||||||    
T  30102471 agtgacatgtatcagtggggccttaagtcaaaaattgggatatgacag 30102518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 37470172 - 37470141
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatga 50  Q
    ||||||||||||||||||||||||||||||||    
T  37470172 agtggggccttaggtcaaaaattggggtatga 37470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 48060760 - 48060795
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||||    
T  48060760 tcagtgaggccttaggtcaaaaattggggtatgaca 48060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 49967389 - 49967354
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49967389 tcagtggggccttaggtcaaaaattagggtatgaca 49967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 68179 - 68145
Alignment:
Q  18 cagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||||||||||||||||||||||||    
T  68179 cagtggggcgttaggtcaaaaattggggtatgaca 68145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 8606212 - 8606162
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||  ||||||||||||||||||||||||||    
T  8606212 gtcgagtgacatgtttcagtgggctcttaggtcaaaaattggggtatgaca 8606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 13086587 - 13086554
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||    
T  13086587 agtgggaccttaggtcaaaaattggggtatgaca 13086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 5651854 - 5651890
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  5651854 tcagtgggaccttaggtcaaaatttggggtatgacag 5651890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 8812638 - 8812602
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  8812638 tcagtgggaccttaggtcaaaatttggggtatgacag 8812602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15529072 - 15529108
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  15529072 tcagtgggaccttaggtcaaaatttggggtatgacag 15529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15579469 - 15579505
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||||||||||||| |||||||||||||    
T  15579469 tcagtgggaccttaggtcaaaaactggggtatgacag 15579505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 46385334 - 46385298
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  46385334 tcagtgggaccttaggtcaaaatttggggtatgacag 46385298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 22081 - 22046
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  22081 tcagtggggccttaggtcaaaaattggggtatgaca 22046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 8015 - 7980
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  8015 tcagtggggccttaggtcaaaaattggggtatgaca 7980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 23618 - 23583
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  23618 tcagtggggccttaggtcaaaaattggggtatgaca 23583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 96817 - 96782
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  96817 tcagtggggccttaggtcaaaaattggggtatgaca 96782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 14891892 - 14891927
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  14891892 tcagtggggccttaggtcaaaaattggggtatgaca 14891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 15061366 - 15061401
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  15061366 tcagtggggccttaggtcaaaaattggggtatgaca 15061401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 25859306 - 25859340
Alignment:
Q  18 cagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||||||||||||||||||||||||||||    
T  25859306 cagtggggccttaggtcaaaaattggggtatgaca 25859340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 32025670 - 32025719
Alignment:
Q  3 tcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  32025670 tcgagtgacatgtgtcagtggggtcttaggtcaaaaattggggtatgaca 32025719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 20733191 - 20733159
Alignment:
Q  21 tggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||||||||||||||    
T  20733191 tggggccttaggtcaaaaattggggtatgacag 20733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22163017 - 22163052
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  22163017 tcagtgggcccttaggtcaaaaattggggtatgaca 22163052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24487946 - 24487981
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  24487946 tcagtgggaccttaggtcaaaaattggggtatgaca 24487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 45469509 - 45469474
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||||    
T  45469509 tcagtgaggccttaggtcaaaaattggggtatgaca 45469474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 22157010 - 22157044
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  22157010 agtgggcccttaggtcaaaaattggggtatgacag 22157044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 6030883 - 6030846
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacagg 54  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  6030883 tcagtgggaccttaggtcaaaaattggggtaagacagg 6030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 10389 - 10339
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  |||| |||||||||||||||||||||||||||||||    
T  10389 gtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 10339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 19814 - 19764
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  |||| |||||||||||||||||||||||||||||||    
T  19814 gtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 19764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 86712 - 86762
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||| |||  ||||||||||||||||||||||||| ||||||||||    
T  86712 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattagggtatgaca 86762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 7831 - 7864
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  7831 agtggggccttaggtcaaaaattggggtatgaca 7864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 89904 - 89937
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatga 50  Q
    ||||||||||||||||||||||||||||||||||    
T  89904 tcagtggggccttaggtcaaaaattggggtatga 89937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 65871 - 65838
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  65871 agtggggccttaggtcaaaaattggggtatgaca 65838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 998 - 962
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||||||||||||||||| ||||||||||||||    
T  998 tcagtggggccttaggtcaaaatttggggtatgacag 962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 805 - 769
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  805 tcagtgggaccttaggtcaaaaattggggtatgacag 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 3371 - 3336
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  3371 tcagtgggaccttaggtcaaaaattggggtatgaca 3336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 15851 - 15816
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  15851 tcagtgggaccttaggtcaaaaattggggtatgaca 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 30730 - 30766
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30730 tcagtgggaccttaggtcaaaaattggggtatgacag 30766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41697 - 41731
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  41697 agtgggaccttaggtcaaaaattggggtatgacag 41731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 17803 - 17839
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17803 tcagtgggaccttaggtcaaaaattggggtatgacag 17839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 25722 - 25757
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  25722 tcagtgggaccttaggtcaaaaattggggtatgaca 25757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1922 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 246 - 281
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||| |||||||||||||||||||||||||    
T  246 tcagtggggcattaggtcaaaaattggggtatgaca 281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 9193 - 9228
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||||    
T  9193 tcagtgaggccttaggtcaaaaattggggtatgaca 9228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 2506 - 2471
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  2506 tcagtgggaccttaggtcaaaaattggggtatgaca 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 7671 - 7706
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7671 tcagtggggccttaggtcaaaaattagggtatgaca 7706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 207 - 242
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||||    
T  207 tcagtgaggccttaggtcaaaaattggggtatgaca 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 6351 - 6386
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||||||||| |||||||||||||||||||    
T  6351 tcagtggggccttaggacaaaaattggggtatgaca 6386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 16568 - 16603
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||| |||||||||||||||||||||||||||    
T  16568 tcagtgggaccttaggtcaaaaattggggtatgaca 16603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 14134 - 14099
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||||||||||||||||||||||| |||||||||    
T  14134 tcagtggggccttaggtcaaaaattgaggtatgaca 14099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 3799 - 3765
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  3799 agtgggcccttaggtcaaaaattggggtatgacag 3765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 1393 - 1434
Alignment:
Q  2 gtcgagtgagatgaatcagtggggccttaggtcaaaaattgg 43  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  1393 gtcgagtgacatgtgtcagtggggccttaggtcaaaaattgg 1434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 11503 - 11470
Alignment:
Q  19 agtggggccttaggtcaaaaattggggtatgaca 52  Q
    |||||| |||||||||||||||||||||||||||    
T  11503 agtgggtccttaggtcaaaaattggggtatgaca 11470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1719 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1719
Description:

Target: scaffold1719; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 21 - 57
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  21 tcagtgggaccttaggtcaaaatttggggtatgacag 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 9368 - 9404
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    ||||||||  |||||||||||||||||||||||||||    
T  9368 tcagtgggaacttaggtcaaaaattggggtatgacag 9404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 1947 - 1983
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| | ||||||||||||||||||||||||||||    
T  1947 tcagtgagaccttaggtcaaaaattggggtatgacag 1983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 6514 - 6550
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||| | ||||||||||||||||||||||||||||    
T  6514 tcagtgagaccttaggtcaaaaattggggtatgacag 6550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 20711 - 20679
Alignment:
Q  20 gtggggccttaggtcaaaaattggggtatgaca 52  Q
    ||||| |||||||||||||||||||||||||||    
T  20711 gtgggaccttaggtcaaaaattggggtatgaca 20679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 24326 - 24298
Alignment:
Q  27 cttaggtcaaaaattggggtatgacaggg 55  Q
    |||||||||||||||||||||||||||||    
T  24326 cttaggtcaaaaattggggtatgacaggg 24298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 38569 - 38605
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||||||||||||||| |||||||||||    
T  38569 tcagtgggaccttaggtcaaaaattcgggtatgacag 38605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 29143 - 29179
Alignment:
Q  17 tcagtggggccttaggtcaaaaattggggtatgacag 53  Q
    |||||||| |||||||||||||||||| |||||||||    
T  29143 tcagtgggaccttaggtcaaaaattggagtatgacag 29179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2454 times since January 2019
Visitors: 2401