View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0219_low_8 (Length: 272)
Name: NF0219_low_8
Description: NF0219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0219_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 15288396 - 15288651
Alignment:
| Q |
1 |
agataaaaaactataatcaaaattggaattataaaattgaattttgattttggttcaagtctttttaccttgagtgagtcagttgaatcggtgactgatt |
100 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15288396 |
agataaaaaactataatcaagattgaaattataaaattgaatttcgattttggttcaagtttttttaccttgagtgagtcagttgaatcggtgactgatt |
15288495 |
T |
|
| Q |
101 |
gatgtgtatagccgttgaaatcgaaatcatcttcgtcggagctgttagcgttgaagcagttacagcggttacgagacggtggttgaagttgcggttgcgg |
200 |
Q |
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| T |
15288496 |
catgtgtatagccgttgaaatcgaaatcatcttcgtcggagctgttagcgttgaagcagttacagcggttacgagacggtggttgaagttgcggttgcgg |
15288595 |
T |
|
| Q |
201 |
ttgttcttccatgaaactctgaaccattttcgccaagcaaacagagcttggttcca |
256 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15288596 |
ttgttcttccatgaaactttgaaccattttcgccaagcaaacagagcttggttcca |
15288651 |
T |
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