View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0220_low_1 (Length: 506)
Name: NF0220_low_1
Description: NF0220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0220_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 35406870 - 35407181
Alignment:
| Q |
30 |
aaaagactatgaggtgacttgtatttcagctagatcatggttcccctcaatcacaacctgatatatacgatatcttgcacgagaatgagtttgagctgtt |
129 |
Q |
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| T |
35406870 |
aaaaggctatgaggtgacttgtatttcagctagatcatggttcccctcaatcacaacctgatatatacggtatcttgcacgagaatgagtttgagctgtt |
35406969 |
T |
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| Q |
130 |
tatggatactggattttatatgctgtcatgttatatgcatataggagtaatacagtacaggaaatattgtatgcccccaacagtgaagcttattatttgt |
229 |
Q |
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| T |
35406970 |
tatgga-actggattttatatgctgtcatgttatatgcatataggagtaatacagtacaggaaatattgtatgcccccaacagtgaagcttattatttgt |
35407068 |
T |
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| Q |
230 |
atcttttttgttttcagaatacatgttaccgcatatcatttccttgacatttgattactggagataaaggaagcttttgcagtacttgaacattttgatg |
329 |
Q |
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| T |
35407069 |
atcttttttgttttcagaatacatgttaccgcatatcatttccttgacatttgattactggagataaaggaagcttttgcagtacttgaacattttgatg |
35407168 |
T |
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| Q |
330 |
ctttgctgtattt |
342 |
Q |
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| T |
35407169 |
ctttgctgtattt |
35407181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 369 - 494
Target Start/End: Original strand, 35407632 - 35407757
Alignment:
| Q |
369 |
tataatactcaacatgtagtactacataaaagtcaatcctttttaatcaagttttaagcacggtggtagtttgacataaacttttgtttatttagtacac |
468 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35407632 |
tataatactcaatatgtagtactacataaaagtcaatcctttttaatcaagttttaagcacggtggtagtttgacataatcttttgtttatttagtacac |
35407731 |
T |
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| Q |
469 |
acgtcttgaatatatttcacggttca |
494 |
Q |
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| T |
35407732 |
acgtcttgaatatatttcacggttca |
35407757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 35407601 - 35407631
Alignment:
| Q |
172 |
aggagtaatacagtacaggaaatattgtatg |
202 |
Q |
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| T |
35407601 |
aggagtaatacagtacaggaaatattgtatg |
35407631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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