View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0220_low_2 (Length: 407)
Name: NF0220_low_2
Description: NF0220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0220_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 336
Target Start/End: Complemental strand, 52696022 - 52695706
Alignment:
| Q |
2 |
cttcttctccttgctcttcttatcaatttcaatctcaatctcatattcaacctgagaaattcaagactcaaccacagtcaactactcttgattttgcaaa |
101 |
Q |
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| T |
52696022 |
cttctcctccttgttcttcttatcaatttcaatctcaatctca------acctgagaaattcaagactcaaccacagtcaactactcttgattttgcaaa |
52695929 |
T |
|
| Q |
102 |
accgattcaattagttaagtcaaatctaaatccaaatccaaatcccaatctcaaacctgaaactaatcaatctactgatttatctgtttctcaatactcc |
201 |
Q |
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| T |
52695928 |
accgattcaattagttaagtcaaatc------------caaatcccaatctcaaacctaaaactaatcaatctactgatttatctgtttctcaatactcc |
52695841 |
T |
|
| Q |
202 |
aaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccaccatcaccggagatggaagcgtttccgacggtaaaataggtcctatca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52695840 |
aaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccaccatcaccggagatggaagcgtttccgacggtaaaataggtcctatca |
52695741 |
T |
|
| Q |
302 |
tttcctctggcaagcctcctctagcttcatctcac |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
52695740 |
tttcctctggcaagcctcctctagcttcatctcac |
52695706 |
T |
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