View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0220_low_5 (Length: 267)

Name: NF0220_low_5
Description: NF0220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0220_low_5
NF0220_low_5
[»] chr8 (7 HSPs)
chr8 (33-228)||(1661467-1661662)
chr8 (37-173)||(11144158-11144294)
chr8 (36-169)||(1604082-1604215)
chr8 (40-169)||(11143801-11143930)
chr8 (33-125)||(44551873-44551964)
chr8 (170-228)||(1604258-1604316)
chr8 (170-228)||(11143700-11143758)
[»] chr3 (3 HSPs)
chr3 (33-173)||(55039985-55040125)
chr3 (40-169)||(55040353-55040482)
chr3 (170-228)||(55040525-55040583)
[»] chr7 (4 HSPs)
chr7 (33-173)||(13948038-13948178)
chr7 (170-228)||(13947655-13947713)
chr7 (106-169)||(13947756-13947819)
chr7 (54-139)||(1972595-1972680)
[»] chr1 (12 HSPs)
chr1 (33-173)||(35163403-35163543)
chr1 (33-173)||(29393911-29394051)
chr1 (37-173)||(30402760-30402896)
chr1 (37-173)||(30409317-30409453)
chr1 (40-169)||(30403124-30403253)
chr1 (40-169)||(30409681-30409810)
chr1 (40-169)||(29394279-29394408)
chr1 (40-169)||(35163046-35163175)
chr1 (170-228)||(29394451-29394509)
chr1 (170-228)||(30403296-30403354)
chr1 (170-228)||(30409853-30409911)
chr1 (170-228)||(35162945-35163003)
[»] chr5 (3 HSPs)
chr5 (37-169)||(9260486-9260618)
chr5 (33-169)||(9260845-9260981)
chr5 (170-228)||(9261024-9261082)
[»] chr6 (3 HSPs)
chr6 (36-118)||(32445856-32445938)
chr6 (33-125)||(14986911-14987002)
chr6 (170-228)||(2311901-2311959)
[»] chr4 (3 HSPs)
chr4 (54-139)||(36892665-36892750)
chr4 (177-228)||(46623737-46623788)
chr4 (142-170)||(46623660-46623688)
[»] chr2 (1 HSPs)
chr2 (54-139)||(26450122-26450207)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 1661467 - 1661662
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1661467 cacagaggcaccacacagcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaaaactatcactattttctcaaag 1661566  T
Q  133 gacaatctttatcaatttatgtaaagtttatttatttatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1661567 gacaatctttatcaatttatgtaaagtttatttatttatttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 1661662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 11144294 - 11144158
Alignment:
Q  37 gaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 136  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11144294 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 11144195  T
Q  137 atctttatcaatttatgtaaagtttatttatttattt 173  Q
     ||||||||||||||||||||||||||||| ||||||    
T  11144194 gtctttatcaatttatgtaaagtttatttaattattt 11144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 1604082 - 1604215
Alignment:
Q  36 agaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggac 135  Q
    |||||||| ||||| || |||| ||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  1604082 agaggcactacacatcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactattttctcaaaagac 1604181  T
Q  136 aatctttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||||||||||||||||||||||||    
T  1604182 aatctttatcaatttatgtaaagtttatttattt 1604215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 11143930 - 11143801
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||| ||||| ||| ||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  11143930 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 11143831  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||||||||||||||||||||    
T  11143830 tttatcaatttatgtaaagtttatttattt 11143801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 44551964 - 44551873
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactatttt 125  Q
    ||||||||||| |||||||| |||| |||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  44551964 cacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 44551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1604258 - 1604316
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604258 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 1604316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 11143758 - 11143700
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143758 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 11143700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 55039985 - 55040125
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55039985 cacagaggcaccacacagcctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 55040084  T
Q  133 gacaatctttatcaatttatgtaaagtttatttatttattt 173  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  55040085 gataatctttatcaatttatgtaaagtttatttatttattt 55040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 55040353 - 55040482
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||| ||||| ||| ||||||| |||||||| ||||||||||||||||||  ||||||| |||||||||||||||||| |||||||    
T  55040353 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactattttctcaaaagacaatc 55040452  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    || |||||||||||||||||||||||||||    
T  55040453 ttcatcaatttatgtaaagtttatttattt 55040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 55040525 - 55040583
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55040525 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 55040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 13948178 - 13948038
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13948178 cacagaggcaccacacagcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctcaaag 13948079  T
Q  133 gacaatctttatcaatttatgtaaagtttatttatttattt 173  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13948078 gacaatctttatcaatttatgtaaagtttatttatttattt 13948038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 13947713 - 13947655
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947713 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 13947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 13947819 - 13947756
Alignment:
Q  106 accaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13947819 accaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 13947756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 1972680 - 1972595
Alignment:
Q  54 gctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||||||  |||  ||| ||||||| |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  1972680 gctgcccctcgagggcacaccgcaaaggacagaaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 35163543 - 35163403
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35163543 cacagaggcaccacacagcctgttgtccctcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctcaaag 35163444  T
Q  133 gacaatctttatcaatttatgtaaagtttatttatttattt 173  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35163443 gacaatctttatcaatttatgtaaagtttatttatttattt 35163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 29393911 - 29394051
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    ||||||||||| ||||| || ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29393911 cacagaggcactacacatcctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 29394010  T
Q  133 gacaatctttatcaatttatgtaaagtttatttatttattt 173  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29394011 gacaatctttatcaatttatgtaaagtttatttatttattt 29394051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 30402760 - 30402896
Alignment:
Q  37 gaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 136  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30402760 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggaca 30402859  T
Q  137 atctttatcaatttatgtaaagtttatttatttattt 173  Q
     ||||| ||||||||||||||||||||||||||||||    
T  30402860 gtctttttcaatttatgtaaagtttatttatttattt 30402896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 30409317 - 30409453
Alignment:
Q  37 gaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 136  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30409317 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggaca 30409416  T
Q  137 atctttatcaatttatgtaaagtttatttatttattt 173  Q
     ||||| ||||||||||||||||||||||||||||||    
T  30409417 gtctttttcaatttatgtaaagtttatttatttattt 30409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 30403124 - 30403253
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||| ||||| ||| ||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  30403124 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 30403223  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||||||||||||||||||||    
T  30403224 tttatcaatttatgtaaagtttatttattt 30403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 30409681 - 30409810
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||| ||||| ||| ||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  30409681 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 30409780  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||||||||||||||||||||    
T  30409781 tttatcaatttatgtaaagtttatttattt 30409810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 29394279 - 29394408
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||| | |||| ||||| ||| |||||||  ||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  29394279 gcactacacagtctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 29394378  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    ||||||||||||||||||||||||||||||    
T  29394379 tttatcaatttatgtaaagtttatttattt 29394408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 35163175 - 35163046
Alignment:
Q  40 gcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||| ||||| ||| ||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  35163175 gcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 35163076  T
Q  140 tttatcaatttatgtaaagtttatttattt 169  Q
    ||||||| |||||||||||||| |||||||    
T  35163075 tttatcactttatgtaaagtttttttattt 35163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 29394451 - 29394509
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394451 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 29394509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 30403296 - 30403354
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403296 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 30409853 - 30409911
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409853 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30409911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 35163003 - 35162945
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163003 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 35162945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 9260486 - 9260618
Alignment:
Q  37 gaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 136  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9260486 gaggcactacacagcctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctcaaaagaca 9260585  T
Q  137 atctttatcaatttatgtaaagtttatttattt 169  Q
    |||||||||||||||| ||||||||||||||||    
T  9260586 atctttatcaatttatataaagtttatttattt 9260618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 9260845 - 9260981
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaag 132  Q
    ||||||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||      
T  9260845 cacagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattttctcaaca 9260944  T
Q  133 gacaatctttatcaatttatgtaaagtttatttattt 169  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9260945 gacaatctctatcaatttatgtaaagtttatttattt 9260981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 9261024 - 9261082
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9261024 atttagatctaatggaactatatttcatattagttattcactcccattatcgtgatgat 9261082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 32445938 - 32445856
Alignment:
Q  36 agaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatca 118  Q
    |||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  32445938 agaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 14986911 - 14987002
Alignment:
Q  33 cacagaggcaccacacagccagctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactatttt 125  Q
    ||||||||||| ||||||||  ||| |||||||||  |||  | |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  14986911 cacagaggcactacacagcctactgcccctcgagataacatgacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 14987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 2311901 - 2311959
Alignment:
Q  170 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  2311901 atttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgat 2311959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 36892750 - 36892665
Alignment:
Q  54 gctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||||||  |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  36892750 gctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 46623737 - 46623788
Alignment:
Q  177 tctaatggaactatatttcatattagttattcacacccattatcgtgatgat 228  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  46623737 tctaatggaactatatttcataatagttaatcacacccattatggtgatgat 46623788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 46623660 - 46623688
Alignment:
Q  142 tatcaatttatgtaaagtttatttattta 170  Q
    |||||||||||||||||||||||||||||    
T  46623660 tatcaatttatgtaaagtttatttattta 46623688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 26450207 - 26450122
Alignment:
Q  54 gctgtccctcgagagcacaccataaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 139  Q
    |||| |||||||| |||||||  |||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||    
T  26450207 gctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1334 times since January 2019
Visitors: 2391