View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0221_low_2 (Length: 517)

Name: NF0221_low_2
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0221_low_2
NF0221_low_2
[»] chr8 (7 HSPs)
chr8 (80-485)||(9888617-9889021)
chr8 (80-484)||(4966439-4966842)
chr8 (421-483)||(42315342-42315404)
chr8 (421-483)||(45244293-45244355)
chr8 (153-261)||(23828571-23828675)
chr8 (482-517)||(35589393-35589428)
chr8 (421-483)||(23828343-23828405)
[»] chr2 (10 HSPs)
chr2 (170-483)||(28926075-28926388)
chr2 (414-483)||(28922417-28922485)
chr2 (414-483)||(6667463-6667531)
chr2 (421-484)||(38955849-38955911)
chr2 (392-485)||(28125534-28125627)
chr2 (432-476)||(10601316-10601360)
chr2 (401-484)||(38996508-38996591)
chr2 (421-483)||(22625396-22625457)
chr2 (421-483)||(29280085-29280146)
chr2 (451-484)||(43114277-43114310)
[»] chr1 (4 HSPs)
chr1 (183-476)||(46555509-46555802)
chr1 (401-483)||(22964007-22964089)
chr1 (436-484)||(24819182-24819230)
chr1 (451-483)||(25184545-25184577)
[»] chr3 (10 HSPs)
chr3 (183-460)||(37605191-37605468)
chr3 (417-483)||(15996384-15996449)
chr3 (414-483)||(15291461-15291529)
chr3 (421-483)||(52041393-52041454)
chr3 (421-484)||(22424379-22424441)
chr3 (436-483)||(42655773-42655820)
chr3 (425-483)||(1529165-1529223)
chr3 (451-485)||(47402581-47402615)
chr3 (436-476)||(30215596-30215636)
chr3 (435-483)||(49235499-49235547)
[»] chr7 (3 HSPs)
chr7 (414-485)||(48850724-48850794)
chr7 (421-485)||(39742303-39742366)
chr7 (414-482)||(6253382-6253450)
[»] chr5 (4 HSPs)
chr5 (414-482)||(22780061-22780128)
chr5 (451-488)||(36434675-36434712)
chr5 (421-484)||(37337322-37337385)
chr5 (412-483)||(26110688-26110760)
[»] chr4 (5 HSPs)
chr4 (421-477)||(9451248-9451303)
chr4 (421-484)||(24257702-24257764)
chr4 (414-466)||(7810064-7810115)
chr4 (421-483)||(6898761-6898822)
chr4 (412-484)||(12094854-12094926)
[»] chr6 (5 HSPs)
chr6 (421-483)||(31665637-31665699)
chr6 (421-483)||(826741-826802)
chr6 (451-483)||(31538600-31538632)
chr6 (436-477)||(30836504-30836545)
chr6 (436-484)||(21762021-21762069)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 80 - 485
Target Start/End: Original strand, 9888617 - 9889021
Alignment:
Q  80 aatattatgtttttgaaggatcttgtttagaaactgcaaatgaatctgttatgtaaacatacatatatatactgcagggatggacatgggaaaggggccg 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9888617 aatattatgtttttgaaggattttgtttagaaactgcaaatgaatctgttatgtaaacatacatatatatactacagggatggacatgggaaaggggccg 9888716  T
Q  180 gttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9888717 gttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataca 9888816  T
Q  280 gatgattggattccttaattgcagtagtagatacaatggattggtaggttgagaaatgtgtgggatgaaaaattgaattgttgagtggaatgctgataag 379  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9888817 gatgattggattccttaattgcagtagtggatacaatggattggtaggttaagaaatgtgtgggatgaaaaattgaattgttga-tggaatgctgataag 9888915  T
Q  380 gaaaaccactttagaggatttaatgcttgtttagtggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagta 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9888916 gaaaaccactttagaggatttaatgcttgtttagtggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttaataagta 9889015  T
Q  480 agattt 485  Q
    ||||||    
T  9889016 agattt 9889021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 80 - 484
Target Start/End: Complemental strand, 4966842 - 4966439
Alignment:
Q  80 aatattatgtttttgaaggatcttgtttagaaactgcaaatgaatctgttatgtaaacatacatatatatactgcagggatggacatgggaaaggggccg 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4966842 aatattatgtttttgaaggattttgtttagaaactgcaaatgaatctgttatgtaaacatacatatatatactacagggatggacatgggaaaggggccg 4966743  T
Q  180 gttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4966742 gttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataca 4966643  T
Q  280 gatgattggattccttaattgcagtagtagatacaatggattggtaggttgagaaatgtgtgggatgaaaaattgaattgttgagtggaatgctgataag 379  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4966642 gatgattggattccttaattgcagtaatggatacaatggattggtaggttaagaaatgtgtgggatgaaaaattgaattgttga-tggaatgctgataag 4966544  T
Q  380 gaaaaccactttagaggatttaatgcttgtttagtggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagta 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4966543 gaaaaccactttagaggatttaatgcttgtttagtggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttaataagta 4966444  T
Q  480 agatt 484  Q
    |||||    
T  4966443 agatt 4966439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 483
Target Start/End: Complemental strand, 42315404 - 42315342
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||||    
T  42315404 aaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 42315342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 45244293 - 45244355
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| ||||||||||| |  |||||||||||||||||| |||||||||| |||||    
T  45244293 aaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagat 45244355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 23828675 - 23828571
Alignment:
Q  153 gcagggatggacatgggaaaggggccggttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatg 252  Q
    ||||| ||||||||||||||||||    | ||||||| | ||||||| |||||  ||||||||||||||||| |||||| ||||||| || || ||| ||    
T  23828675 gcaggaatggacatgggaaagggg----tggagttttaatatgcataaggagctgaattggcatgttgggaagacaaaatggctgctagaattaaaactg 23828580  T
Q  253 gcacatgat 261  Q
    || ||||||    
T  23828579 gcgcatgat 23828571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 517
Target Start/End: Original strand, 35589393 - 35589428
Alignment:
Q  482 atttgatcaagggtccaaaactgccatattttaaaa 517  Q
    ||||||||||||||||||||||||||||||||||||    
T  35589393 atttgatcaagggtccaaaactgccatattttaaaa 35589428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Complemental strand, 23828405 - 23828343
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| | ||||||||| |  ||||||||||||| ||||||| ||||||| |||||    
T  23828405 aaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 170 - 483
Target Start/End: Complemental strand, 28926388 - 28926075
Alignment:
Q  170 aaaggggccggttgagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagt 269  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||||     
T  28926388 aaaggggccggtggagttttaagatgcatagggagcataattggcatgttgggaaaacaaaagggctgttagatttgaaaatggcgcatgattttggaga 28926289  T
Q  270 aaccgataaagatgattggattccttaattgcagtagtagatacaatggattggtaggttgagaaatgtgtgggatgaaaaattgaattgttgagtggaa 369  Q
    || | | | ||||||||| || | |||| | |||||||||| ||||||||| |  ||  | ||||| |||||||||||||| ||||||||||||||| ||    
T  28926288 aaacaacatagatgattgaatgcattaaatacagtagtagaaacaatggatcgacagaattagaaacgtgtgggatgaaaacttgaattgttgagtgaaa 28926189  T
Q  370 tgctgataaggaaaaccactttagaggatttaatgcttgtttagtggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagct 469  Q
    ||||||||||||||||||||| |||| ||| ||||  || |||||||||||||| |||||||| ||||||||||| |  |||||||||||||||||||||    
T  28926188 tgctgataaggaaaaccacttaagagaattaaatgtgtgattagtggagggaaaaattaggttaagaattagggttactaatagcttgaccagacaagct 28926089  T
Q  470 ttagtaagtaagat 483  Q
    |||||||| |||||    
T  28926088 ttagtaagaaagat 28926075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 483
Target Start/End: Original strand, 28922417 - 28922485
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||| ||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  28922417 tggatggaaaaattaggttaaga-ttagggtaaacaatagcttgaccagacatgctttagtaagtaagat 28922485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 483
Target Start/End: Complemental strand, 6667531 - 6667463
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  6667531 tggagggaaaaattaggtt-aggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagat 6667463  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 38955849 - 38955911
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||||| ||||||||||| | |||||| |||| |||| ||||||||||||||||||||    
T  38955849 aaatattaggtt-agaattagggttatcaatagtttgatcagataagctttagtaagtaagatt 38955911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 485
Target Start/End: Complemental strand, 28125627 - 28125534
Alignment:
Q  392 agaggatttaatgcttgtttagtggagggaaa-tattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagattt 485  Q
    |||| ||| |||||||||  | |||||||||| ||||||| ||| ||||||||||    |||||||||||||||||||||||||||| |||||||    
T  28125627 agagaattaaatgcttgtacaatggagggaaaatattagggtta-aattagggtatgagatagcttgaccagacaagctttagtaagaaagattt 28125534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 10601316 - 10601360
Alignment:
Q  432 ttagaattagggtaaacaatagcttgaccagacaagctttagtaa 476  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||||    
T  10601316 ttagaattaggttaaacaattgcttgacaagacaagctttagtaa 10601360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 38996508 - 38996591
Alignment:
Q  401 aatgcttgtttagtggagggaaa-tattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||| ||||||  |||||||||| ||||||||| | |||||||||||   ||||||||| |||||||||||||||||| ||||||    
T  38996508 aatgtttgtttgatggagggaaaatattaggttaa-aattagggtaacatatagcttgatcagacaagctttagtaagaaagatt 38996591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 22625396 - 22625457
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| | ||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  22625396 aaatattaggttaa-aattagggtatccaattgcttgaccagacaagttttagtaagaaagat 22625457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Complemental strand, 29280146 - 29280085
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| | ||||||||| ||||||||||| | |||||||| ||||||||| |||||    
T  29280146 aaatattaggttaa-aattagggtgaacaatagcttcatcagacaagttttagtaagaaagat 29280085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 43114277 - 43114310
Alignment:
Q  451 tagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||| |||||||||||||||||||||||    
T  43114277 tagcttgacctgacaagctttagtaagtaagatt 43114310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 183 - 476
Target Start/End: Complemental strand, 46555802 - 46555509
Alignment:
Q  183 gagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataaagat 282  Q
    ||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||| || |||||| ||||  | ||||  |||| || | ||| ||||    
T  46555802 gagttttaatatgcaaagggagcataattggcatgttgggaaaataaaagggctgctagaattgaaactggcgtaggatttgggagaaaacaatacagat 46555703  T
Q  283 gattggattccttaattgcagtagtagatacaatggattggtaggttgagaaatgtgtgggatgaaaaattgaattgttgagtggaatgctgataaggaa 382  Q
    ||||  || | |||| | |||||| ||| | ||||||| || ||  |  ||| | ||||||||||||| ||||||||||||||| |||||||||||||||    
T  46555702 gattaaatgcattaaatacagtaggaga-ataatggatcggcagaattggaattttgtgggatgaaaacttgaattgttgagtgaaatgctgataaggaa 46555604  T
Q  383 aaccactttagaggatttaatgcttgtttagtggaggg-aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaa 476  Q
    |||||||  |||| ||| |||| ||| ||||||||||| |||||||||||| ||||||||||| |  |||||||||||| |||||||||||||||    
T  46555603 aaccactcaagagaattaaatgtttgattagtggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaa 46555509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 22964089 - 22964007
Alignment:
Q  401 aatgcttgtttagtggagggaaa-tattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||| ||  |||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  22964089 aatgcttggttgatggagggaaaatattaggtt-agaattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 24819230 - 24819182
Alignment:
Q  436 aattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    ||||||||| |  ||||||||||||| ||||||||| ||||||||||||    
T  24819230 aattagggttagtaatagcttgaccaaacaagctttggtaagtaagatt 24819182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 483
Target Start/End: Complemental strand, 25184577 - 25184545
Alignment:
Q  451 tagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||||||||||||| ||||||||||    
T  25184577 tagcttgaccagacaagctttaataagtaagat 25184545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 183 - 460
Target Start/End: Original strand, 37605191 - 37605468
Alignment:
Q  183 gagtttttagatgcatagggagcataattggcatgttgggaaaacaaaagggctgctggatttgaaaatggcacatgattgtggagtaaccgataaagat 282  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||||  | ||||  |||| || | ||| ||||    
T  37605191 gagttttaatatgcatagggagcataattggcatgttgggaaaataaaagggctgctagaattgaaactggcgtaggatttgggagaaaacaatacagat 37605290  T
Q  283 gattggattccttaattgcagtagtagatacaatggattggtaggttgagaaatgtgtgggatgaaaaattgaattgttgagtggaatgctgataaggaa 382  Q
    ||||  || | |||| | |||||| ||| | ||||||| || ||  |  ||| | ||||||||||||| ||||||||||||||| |||||||||||||||    
T  37605291 gattaaatgcattaaatacagtaggaga-ataatggatcggcagaattggaattttgtgggatgaaaacttgaattgttgagtgaaatgctgataaggaa 37605389  T
Q  383 aaccactttagaggatttaatgcttgtttagtggaggg-aaatattaggtttagaattagggtaaacaatagcttgacc 460  Q
    |||||||  |||| ||| |||| ||| ||||||||||| |||||||||||| ||||||||||| |  ||||||||||||    
T  37605390 aaccactcaagagaattaaatgtttgattagtggagggaaaatattaggttaagaattagggttactaatagcttgacc 37605468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 15996384 - 15996449
Alignment:
Q  417 agggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  15996384 agggaaaaattaggtt-agaattagggtaaacaatagcttgatcagacaagctttagtaagaaagat 15996449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 483
Target Start/End: Complemental strand, 15291529 - 15291461
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  15291529 tggagggaaaaattaggttaaga-ttagggtaaacaatagcttgaccaaacaagctttagtaagaaagat 15291461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 52041393 - 52041454
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  52041393 aaatattaggttaa-aattagggtgaacaatagcttgaccagacaagctttagtaagaaagat 52041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 22424379 - 22424441
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||||| | ||||||||| |||||||||||||||||| || |||||||||| ||||||    
T  22424379 aaatattaggttaa-aattagggtgaacaatagcttgaccagataaactttagtaagaaagatt 22424441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 42655820 - 42655773
Alignment:
Q  436 aattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  42655820 aattagggtgaacaatagcttgaccagacaagctttggtaagaaagat 42655773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 1529223 - 1529165
Alignment:
Q  425 attaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||||    
T  1529223 attaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 485
Target Start/End: Original strand, 47402581 - 47402615
Alignment:
Q  451 tagcttgaccagacaagctttagtaagtaagattt 485  Q
    |||||||||| ||||||||||||||||||||||||    
T  47402581 tagcttgacctgacaagctttagtaagtaagattt 47402615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 30215636 - 30215596
Alignment:
Q  436 aattagggtaaacaatagcttgaccagacaagctttagtaa 476  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  30215636 aattagggtaaacaattgcttgacaagtcaagctttagtaa 30215596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 483
Target Start/End: Original strand, 49235499 - 49235547
Alignment:
Q  435 gaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||||  |||||||||||| |||| |||||||||| |||||    
T  49235499 gaattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 48850794 - 48850724
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagattt 485  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  48850794 tggagggaaaaattaggttaaga-ttagggtaaacaatagcttgatcagacaagctttagaaagaaagattt 48850724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 485
Target Start/End: Original strand, 39742303 - 39742366
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagattt 485  Q
    |||||||||||| ||| ||||||| | ||||||||||| || ||||||||||||||| |||||||    
T  39742303 aaatattaggttaaga-ttagggttatcaatagcttgatcaaacaagctttagtaagaaagattt 39742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 6253450 - 6253382
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaaga 482  Q
    |||||||||| |||  | ||||||||||| |||||||| ||||||  | ||||||||||||||| ||||    
T  6253450 tggagggaaaaatttaggttagaattaggttaaacaattgcttgattaaacaagctttagtaagaaaga 6253382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 22780061 - 22780128
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaaga 482  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| ||| ||||    
T  22780061 tggagggaaaaattaggttaaga-ttagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 36434675 - 36434712
Alignment:
Q  451 tagcttgaccagacaagctttagtaagtaagatttgat 488  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36434675 tagcttgaccagacaaactttagtaagtaagatttgat 36434712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 37337385 - 37337322
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||||| | ||||||||| |   |||||||||||| ||||||||||||||| ||||||    
T  37337385 aaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagatt 37337322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 483
Target Start/End: Complemental strand, 26110760 - 26110688
Alignment:
Q  412 agtggagggaaa-tattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| ||||||||| | ||||||||| |   |||||||||||| ||||| ||||||||| |||||    
T  26110760 agtggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagat 26110688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 9451303 - 9451248
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaag 477  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  9451303 aaatattaggttaa-aattagggtgaacaatagcttgaccagacaagctttagtaag 9451248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 24257764 - 24257702
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||||| | ||||||||| |||||| ||||||||| ||||||||||||||| ||||||    
T  24257764 aaatattaggttaa-aattagggtgaacaattgcttgaccaaacaagctttagtaagaaagatt 24257702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 7810115 - 7810064
Alignment:
Q  414 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaa 466  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  7810115 tggagggaaaaattaggttaaga-ttagggtaaacaatagcttgaccaaacaa 7810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 6898761 - 6898822
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| ||| ||||||| | ||||||||||| || ||||||||||||||| |||||    
T  6898761 aaatattaggttaaga-ttagggttaccaatagcttgatcaaacaagctttagtaagaaagat 6898822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 12094854 - 12094926
Alignment:
Q  412 agtggagggaaa-tattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    |||||||||||| ||||||||| | |||||||||    ||||||||||||| ||||||||||||||| ||||||    
T  12094854 agtggagggaaaatattaggttaa-aattagggtttctaatagcttgaccaaacaagctttagtaagaaagatt 12094926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 31665637 - 31665699
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||||    
T  31665637 aaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 31665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 826741 - 826802
Alignment:
Q  421 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||| | ||||| ||| |||||||||||||||||||||| ||||||||| |||||    
T  826741 aaatattaggttaa-aattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 483
Target Start/End: Complemental strand, 31538632 - 31538600
Alignment:
Q  451 tagcttgaccagacaagctttagtaagtaagat 483  Q
    |||||||||||||||||||||||||||||||||    
T  31538632 tagcttgaccagacaagctttagtaagtaagat 31538600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 30836504 - 30836545
Alignment:
Q  436 aattagggtaaacaatagcttgaccagacaagctttagtaag 477  Q
    ||||||||| |||||| |||||| ||||||||||||||||||    
T  30836504 aattagggtgaacaattgcttgatcagacaagctttagtaag 30836545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 21762069 - 21762021
Alignment:
Q  436 aattagggtaaacaatagcttgaccagacaagctttagtaagtaagatt 484  Q
    ||||||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  21762069 aattagggtgagcaatagcttgatcagacaagttttagtaagaaagatt 21762021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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