View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0221_low_3 (Length: 444)
Name: NF0221_low_3
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0221_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 162 - 415
Target Start/End: Original strand, 42331698 - 42331953
Alignment:
| Q |
162 |
gtattgtcgaactagaagagagaaagnnnnnnn--gttaccaattccatttagatatcttgaaagcttcggacgtgtggataaagctgtgaggaatcata |
259 |
Q |
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| T |
42331698 |
gtattgtcgaactagaagagagaaagaaaaaaaaagttaccaattccatttagagatcttgaaagcttcggacgtgtggataaagctgtggggaatcata |
42331797 |
T |
|
| Q |
260 |
ttcatgctcttaaaactgagtctccattgagcgacgtaacccacagattccacttcgaatggagagtaaaacatcctattcatacaaaacaaacagcaat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42331798 |
ttcatgctcttaaaactgagtctccattgagcgacgtaacccacagattccacttcgaatggagagtaaaacatcctattcatacaaaacaaacagcaat |
42331897 |
T |
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| Q |
360 |
tccactctatttttctgttaaacttatatgattctagtgattcaggaggtatatat |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
42331898 |
tccactctatttttctgttaaacttatatgattcttgtgattgaggaggtatatat |
42331953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 42331554 - 42331596
Alignment:
| Q |
16 |
agggaatccctcgagaatgatatgtgccttcgtgttgggaagt |
58 |
Q |
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| T |
42331554 |
agggaatccctcgagaatgatatgtgccttcgtgttgggaagt |
42331596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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