View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0221_low_4 (Length: 386)
Name: NF0221_low_4
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0221_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26315740 - 26315980
Alignment:
| Q |
1 |
tggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcg |
100 |
Q |
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| T |
26315740 |
tggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggttttgtcaaagtcg |
26315839 |
T |
|
| Q |
101 |
aaaaccactacaataatagccata--atggtgacagagaaatattttgtttgtttttgagaaaaccaagaatttattatactacaatacgtagcacaaga |
198 |
Q |
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||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26315840 |
aaaaccactacaatactagccataatatggtgacaaagaaatattttgtttgtttttaaaaaaaccaagaatttattatactgcaatacgtagcacaaga |
26315939 |
T |
|
| Q |
199 |
catgc-nnnnnnngcacgtaaagaaaggatacaattcaaaa |
238 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
26315940 |
catgcaaatataagcacgtaaagaaaggatacaattcaaaa |
26315980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43110848 - 43110973
Alignment:
| Q |
1 |
tggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcg |
100 |
Q |
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||||||| |||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
43110848 |
tggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtca |
43110947 |
T |
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| Q |
101 |
aaaaccactacaataatagccataat |
126 |
Q |
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|||||||| |||||| |||||||||| |
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| T |
43110948 |
aaaaccacaacaatattagccataat |
43110973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 5269000 - 5268904
Alignment:
| Q |
9 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
105 |
Q |
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| T |
5269000 |
tgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaac |
5268904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 5249765 - 5249659
Alignment:
| Q |
9 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccac |
108 |
Q |
| |
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| T |
5249765 |
tgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaattatggttttatcaaaatcaaaaactac |
5249666 |
T |
|
| Q |
109 |
tacaata |
115 |
Q |
| |
|
|||||| |
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|
| T |
5249665 |
aacaata |
5249659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 5276756 - 5276850
Alignment:
| Q |
11 |
ggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
105 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||||||| | ||| ||||| |||||||| || || || ||||||||||| || ||||| |
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| T |
5276756 |
ggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaac |
5276850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 5272783 - 5272878
Alignment:
| Q |
9 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaa |
104 |
Q |
| |
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|||||| ||| |||||||||||||| ||||||| |||||||||| | ||| ||||| || ||||| || || ||||||||||||||||| |||| |
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| T |
5272783 |
tgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtcaaaaa |
5272878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19569227 - 19569168
Alignment:
| Q |
16 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
75 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||||| |
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| T |
19569227 |
gagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcaca |
19569168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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