View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0221_low_5 (Length: 370)
Name: NF0221_low_5
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0221_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 32887632 - 32887519
Alignment:
| Q |
130 |
tcaaagacctagaaatagaacctacaattctaagtccaaaattaaaactcttgctcaataca----attc----taagttgccttaaaacaagagatgaa |
221 |
Q |
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| T |
32887632 |
tcaaagacctagaaatagaacctacaattctaagtccaaaaataaaactcttgctcaatacacaccatgcaaagtaactagccttaaaacaagagatgaa |
32887533 |
T |
|
| Q |
222 |
ctcaatttccttac |
235 |
Q |
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| T |
32887532 |
ctcaatttccttac |
32887519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 32887632 - 32887586
Alignment:
| Q |
283 |
tcaaagacctagaaatagaacctacaattctaagtccaaaattaaaa |
329 |
Q |
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| T |
32887632 |
tcaaagacctagaaatagaacctacaattctaagtccaaaaataaaa |
32887586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 32887495 - 32887452
Alignment:
| Q |
232 |
ttaccactacttatattaattatccatgatagctccagcaacca |
275 |
Q |
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| T |
32887495 |
ttaccactacttatattaattatccatgatagctccaacaacca |
32887452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 32887495 - 32887452
Alignment:
| Q |
79 |
ttaccactacttatattaattatccatgatagctccagcaacca |
122 |
Q |
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| T |
32887495 |
ttaccactacttatattaattatccatgatagctccaacaacca |
32887452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32887608 - 32887519
Alignment:
| Q |
1 |
caattctaagtccaaaattaaaactcttgctcaataca----attctaagtt----gccttaaaacaagagatgaactcaatttccttac |
82 |
Q |
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||||||||||||||||| |||||||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||| |
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| T |
32887608 |
caattctaagtccaaaaataaaactcttgctcaatacacaccatgcaaagtaactagccttaaaacaagagatgaactcaatttccttac |
32887519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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